BtaINT0008977 @ bosTau6
Intron Retention
Description
Quinone oxidoreductase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A6QQF5]
Coordinates
chr16:60851233-60853636:-
Coord C1 exon
chr16:60853455-60853636
Coord A exon
chr16:60851462-60853454
Coord C2 exon
chr16:60851233-60851461
Length
1993 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTCCTCCTTTTCCCCTCAGCCT
3' ss Score
10.11
Exon sequences
Seq C1 exon
GTAATAGCTGCAGCTGGAAGTGATGAAAAGTGTCAGCTGGCGATGCAGAGTGGGGCACAGTCCAGCGTGAACTACAGTCGGGGCAGCCTTAAGGAGGCTGTGGGGAAGCTGGTGGGCAGTGGCGGGGTGAACGTGGTCATTGACATGGTGGGAGGAGACATCTTCCTGGAGGCTCTCCGCAG
Seq A exon
GTAGGTGAGGTGGTCCTCCTGGGTGGGCTAGACCGGGGGCTCTGCTGAAACCTTCCCAGACCTCTGGCTTCCTTCCGGCCTTGCTGCTTTCTTGTTTTTGCTGCTCACTTTTCCTGTAGGCACTGGCATCAACGGGAACAGCTGAGTGGGTGGGTGAAAAGGAATAGAAGCAGAGGGAAAATCAGGAAATGCTTAAATATAGCAAAAACAAAATAGCCAACTGGAAAATATCCAAAAAAAACAAAAAACAAAAAACTGCAGACTCTCTAGTTGGCAATATCAAATGCTTTAGAAATTATACATGTGTTAAATTCAGCTCTGCCTGCACCCACTAGCTACTTTATATACATGGTATGGGTAATTCTTTTTATTTTTAATTAAACTTTTTATTTTGCATTGGAGTATAGCTGATTAGCAATGTGATAGTTTCAGGTAGATGGCAAAGGGACTCAGCCATGTATATACCTGTATCCATTCTCCCCCAAACTCTCCTCTTTGGGTAATTCTTGAGGAGATCATTGTTTGGATGTTAGAATTACTGGGGTGGCAGACCCCCAGTTCACTATGCACCAAGGGAGAGTCTCTTTTGATCTTACTGGTTTCTGAAGCTACCACCAGTGTAGGTGTCTTCTTGACTTGTTTTATTTAAAAAAAAAAAAAATCACTGGAGAGTTCATGGGACTGTTGTATCTATACTAATTCTCATTCCGTTTCAACCAGGAAGTCTGCAGTGCTCTGATAGTATTAGCTTCATTTCTCATGTCATCCTGGCAAGCATAGTTTTGTGCTTTATCTTAGCTTAAGGAGAAGAAGCAAAGAGAGCAGCTTGCCCACAGAAGGGATCCGTGTGGTCCCCTTACAAGACTGGTTAGTTCCTCTGCTCCTTACTGTCTTTCTTGCTTATGGCTTATTTTTTATCTTTTCCTACTGAGAAATCCAAACTGGTGCAGAATGGTTCCCCCCTGCTAGTTTGCAAGGTCAAGAGGAATTCCCAACTGGGAATTTAATGCATGTTGCTTTTTTTTTGTTAATTGTGGTAAAATACAGGTAACCTAGTATTTAACATTTTAACCATTTTAAGTGTACAGTTAAACTGGTTCACCATCTCCAATATTGTGTAACCATCTCCAATACAAACTCTGTACCCATTAAACAACTGCCCGCCAACTCCCATAAGCTCTATTCTATTTTCTGCCTCTCTTAATTACTGTCCATTGCTTTTTCTTCCCTCATACTGTTTTTTAGTGTGGTAAAAAGTATATAACAAAAGGCTTGCTATATTAACTGCTATAAAATGTAGAGTTCAGTGGTGTTAAATATATTTACATTGTGAAACAGGTCTTCATGACTTTCTTCTTGCAAACCTGAAATTCTGTACCCATTAAGTAACTCTCTTCTCCCCTTCTCCCCAGCCCTTGGTAATCGCTATTCTACTTTGTTTCTGTGAATCTGACTCTTTAGATACCCCAGATAAGCAGAATAATACAATATTCATTTTTCTGTAAGTGGCTTGTTTCACTTACCGTAATGACCTTAAGGCTCATCTGTGTCTTAAAATGGGACAGAGTTTCCTTCCTTTTTAAGGCTAAATAATACTCTACTGTATGTATATAACACCTTCTGTTTACCAGTCCATCAGTGGATAGACATTTGGATTGTTTCCACCTCTTGGCTTTTATAGATAGTGCTACTGTGAACTTGGCTCTTCAAATACCTCTTCAAGACTCTGCTTTCAGTTCTTTTGGATATAGACTCAGAAGTGAGATTGCTGGGTTATATGGTAGTTCTGGTTTTGAGTTTTTGAGGAATCTCCATGCTGTTTTCCATAACATTTGCACCATTTTACAATCTCAGCAATGTTCCTTGAGGGGTCCACTTCTCTAGATCCTTGCTAACACTTATTTTCTCTTTTATTTTTAATAGTAGCCATCCTGGTGGCTGTGAATGTGCATTGTCTTTTATAATCTTTGTTTTTTCCTCCTTTTCCCCTCAG
Seq C2 exon
CCTGGCGTATGAGGGCAGGATCGTAGTGGTAGGTTTCGCTGGAGGAACCATTGCTTCTGTACCAGCCAATCTGCTGCTGCTGAAGAATGTTAGTGCCATGGGGCTGTACTGGGGCAGATACCGGCAGCAGAACTTTCCCGTCTTCTCCAGAAGCCTGTCCTCAGCACTTCAGTACTGCCAAGAAGGGCGCATCCAGCCACACATTGGAGAGGTTTTTGAACTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046172:ENSBTAT00000064011:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(45.5=100)
A:
NA
C2:
PF0010721=ADH_zinc_N=PD(40.9=70.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGCTGGAAGTGATGAA
R:
GAAGTGCTGAGGACAGGCTTC
Band lengths:
346-2339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development