GgaINT0036525 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:6917586-6918463:+
Coord C1 exon
chr8:6917586-6917767
Coord A exon
chr8:6917768-6918234
Coord C2 exon
chr8:6918235-6918463
Length
467 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGTCACTTGTCTTCTTGCAGTTT
3' ss Score
10.05
Exon sequences
Seq C1 exon
GTGATAGCAGCAGCCGGCAGCGATCCCAAGTGCCAGCTGGTCCTGGCAAATGGGGCAAGCCATGCAGTGAACTACAGCCAGAACAGTCTCAGGGAGCAGGTGACAGCACTCACAGGTGGCAGAGGGGTCGACGTGGCCATTGAAGCTGTTGGTGGGGACATCTTCAAGGCTGTCCTGCAGAG
Seq A exon
GTGAGCAAAAGTGAGAGGTGATGCTATTGGCATGCGTTGAGCAAGGTGAAGCTAACCCACCAGGCTCTGCCTGCCCCAGCTGGTGGTGGAGGCAGAGATCATAGAACAGAAGAGAGATCACAGCATCATTAAGGTTGGAAAAGACCTGTAAGATCATCCACAAACCCCAGCCCATCCCCCCCTCATGCCCACTGACCACACCTCCACAATTCTGACCACCACCACTGGCCATGCCCCTCAGTGCCACACCTCCACAATTCTTGAACACCTCCAAGGATAGTGACTCCACCACCTCCCTGGGCAGCCTGTGCCAAAATCTCACCACTGAGAAGAAACTTGCCCTAATACCCAAGCTGGAGGCTGTATAAGATGCATTTGCTCAACCCCAAATGGCTTCTTATGGCCAAGGTAGCCATAAGGTTGCCTTGGGATGAGGTTTCAAATACCTGTCACTTGTCTTCTTGCAG
Seq C2 exon
TTTGGCTTGGGAGGGCAGGATTGTGGTGATGGGTTTTGCCGGAGGGAAAATCCCCTCAATTCCTGCCAACCTGCTGCTCCTGAAGAACGTGTCAGCCATGGGAGTGTACTGGAGTCGGTACCAGCAGGAGGACTTCCCTCTTTTCTCCTCTGCCATGTCCTCCCTTCTTCAGTATGGCCGGGAGGGAAAGATCCATCCGCACATTGGAGCAGTCTTCAAGCTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341:ENSGALT00000006927:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(45.8=100)
A:
NA
C2:
PF0010721=ADH_zinc_N=PD(40.5=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATGCAGTGAACTACAGC
R:
TGAAGACTGCTCCAATGTGCG
Band lengths:
343-810
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]