RnoINT0154758 @ rn6
Intron Retention
Gene
ENSRNOG00000005177 | Tp53i3
Description
tumor protein p53 inducible protein 3 [Source:RGD Symbol;Acc:1304982]
Coordinates
chr13:75124183-75126834:+
Coord C1 exon
chr13:75124183-75124364
Coord A exon
chr13:75124365-75126605
Coord C2 exon
chr13:75126606-75126834
Length
2241 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TGTTTCCTCCTGGTCCTCAGCCT
3' ss Score
6.09
Exon sequences
Seq C1 exon
GTCATAGCTGCAGCTGGGAGCGACGAGAAATGCAAGCTGGCGATGCAGAGGGGAGCACAGTCCGGCGTGAACTACAGCCAGGGCAGCCTGAAGGATGCAGTGAAGAAGCTGGTGGGCAGCAGTGGGGTGAATGTGGCCATTGACATGGTGGGAGGAGATGTCTTCCTGGACTCTCTCCGCAG
Seq A exon
GTGCGTGTGCTGCTCTGTCCAGAATGGTTAGAGCCGGGGCTCCACAGAACCTTCCTACAGCTCTGACTCCCAGCTTGGTTTCTCTCAGTCTTTGCAGCTCACGTCTCCTGTAGGCATCAGCGTCAACGAGAATAGCTGAGTGGGTGGGTGACAAGGAACAGAAGCAGAGAAAATCAGGAAATGCTTAAATATAGTAAAAACAAAATATCCAACTGGAAAATATTCAAAAAATGACTCCAGACTCTCTAGTTGGCAACACTGGAGACTTTAGAAATCATCCATGTGTTAAATCTAGCTCTCTGGCCCTCCACTAGGCTGCATTAAATATATGGGGGTGTGGGGTCCCGGGGAGATCATTGTTCAGATGCTAGAGTGGCTGAGGTGGTAGTTCCTCATTCCCCAGCTGATTATGCACCAAGCTACAAGCTTATTTGATGGCGCTGGTCCTGCAGTAGCTGTGTGCTTCCTTGGTTTGTCTGATTAACTCTGTGTCACTGGAGACTTGGTGGGACTGTTCTACCTTACCAGTCTCTATTTCCCCCAGGGTGTCTGGTGTGCTCTGCAAGCCTCATTCCCACCTGTTCTTTCCCCCCTCCCCTTTTCCTCTCCTCCTGGGTTTCTTAAGACAGGGTATTTGCTATGCTGTTTTGAAGCTCACTCTGTAGCTAAGGCTGGCCTTGAACTCCTGATCCCGCTGCCTCTGAGTGCTGAGTTTGTAAGCACACATGAGTCTCTACACCTGGCCTGCTTTCATTTTTCGCATCTGCACATTGTAATTTATCTCAATTTGAAGAAGAAAAACCAGAGCAGCAAGAGCTGCCTACCCACAGAAGGAATCCAGTCAGCACTGGGTAGAATCCAGAAGGAATCCCTGAGCGGGGAGGAGGAGTGTGGTATCACTCAGGATGCTGGTCCTACGCTCAGAGAAGACACAGAGGAGGAAACGGAGAACGAGTGGACCTACTCTCGATCCTTCCATCTTGCCTTCTGGTTTTGTAAACAGCTTCTCATTTCCTTTCTGAAGAAGAAAAACAAAACCCCAAAACCCTGAGAGGAACAACTATGCACACCTCTTCTGTCAAAGCCCCATGCAAAGGCATTGTTTCTGACCCACGTGTGCCGTGCTCTCTGGAACTTTTCACAATGGGCTGCCGAAACCTCTGGAGGTTTTGTAGATTATTCAGAATTCTCAAAAGAAATCCCATGCCTTAAGGAGTCCTAAAGTGTCCTTGTTTCCATCATCTGCCTTATTTTTGCTGCCTAAGTTCCAAATCTTCAAGCTGACTTGTCTTGACATACAGCCCATGGAGTGACATTGGTTGATACCCAATATCCTTCCACTTTTGAAGAGTCAGCCTTGATTCTAAAGCATCCTGTCCCAAAGGACACTTCTGTGACAATGGGTGACAGGATTTCTTCCCTTGCAGAGGCTGAATACCATTCCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGTTTATCTTTCATCTGATGAGGACTCTGGGCTTGTTTTTACCTTTTGGCTATTTGGAAGTGATGCTGTCATTGACAGAGATGTGCATAGAGAGCTCATGGTGTGTTTTCTGTTCTCTCAATTTAGATATTTTTTTAATGACTTATAATTTTTATTTTATTTTTGAGGAAAATTCATTACTGTTCTCCCTCAATAGTAAGCCCCCCACTTTGAAATATTTCCTACTACAAAGCATGGGGATTGTATATTAATTCTCCACATATTATATTAATGGTTTGGTTCTCTGTTACTTTATGCCATCTTGATGGATATAATCACCTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATGTATGTGTATGCATGTACACATTGGGGGCTGTGTACTTGCCCGTGTTGCTTGTGTGGAGGCCAGAGGTTGAGATTGGGTCTCTTCCTCTGTTGCTCTCCACCTGATTCTTTTGGGCACAGGGTCTCTCACTGAACCCAGAAGTCACCATGTCACCACCTCAGCCTGGCTGCCTAGGGGCCCTGTTATCAGTGCTGGGACTATGGGTGCACACCGCCACGCTTGACCTTTTGTATGAGTGCTGGGGATGGGAATGCAGGTTCTTAGGCTTGCACTTTACAGGCTGAGCCATCCTCCCAGCCCTGTCTGTTGCTTCCCGTAACCTTTCTGTTTCCTCCTGGTCCTCAG
Seq C2 exon
CCTGGCGTGGGAGGGCAGGATTGTGGTGTTGGGATTCGCCGGAGGAAACATCGCATCCGTGCCCAGCAACCTGTTGCTCCTGAAGAACATCTCTGCCATGGGCCTGTACTGGGGTCGCTACCAACACCAGGACTTTGCAGTGTTTTCCAAGAGCATGTCCACAGCCCTGCAGTACTGCCAGCAAGGGCTCATCCACCCACACACTGGTGCTGTCTTCAAGCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005177:ENSRNOT00000006924:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PD(24.3=63.0),PF0010721=ADH_zinc_N=FE(74.6=100)
A:
NA
C2:
PF0010721=ADH_zinc_N=PD(41.8=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]