BtaINT0009018 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3N1P6]
Coordinates
chr11:105909839-105910964:-
Coord C1 exon
chr11:105910832-105910964
Coord A exon
chr11:105910014-105910831
Coord C2 exon
chr11:105909839-105910013
Length
818 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CACCTGTGCTCTCCCGACAGTGG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GCACAGGCTCAGTCTGCTGGAGCGGGTCAGCGCCGAGGCTGTGACCAGCACCCTGCACCAGGTGACCCGGGAGCGGATGGAGGACCGTTGTCGGGGGGAGTACGAACGCTCCTTCCTGCGAGAGTTCCATAAG
Seq A exon
GTGAGGCCCTGCCCCCCGCCCACAGACGAGAAGAGGCTGCTGGCAAAACTGACTAGGTGCCTTGGCTTTAGAAGTGGGCAGAGTGTGGTGACCTGGGTGAATCAGGGCGCTGCTGGTGACTGAAGCTGTCTTGGTGCTGGGTGGAGGCTGGTCATCCTGGGCCCACCCTGGCGCCAGTGAGGAAGAGCCTGTGACATGCTTGCTGAGATCTGTGCAGGGCCACATGGCTAGAGGCAGCCCTAAGGTCTGGGCTGTCCCAGCGAGGGGCCTTGGGGTGTCCATGCTGTTGGGGCGTGGCCTGGGGCCTGCCCTGGGCTGCACAACATTGTGGGAGAGCTGGGCCCAACCGTGGGGCTCTCAGCCTGCGTCACTTCCCACCTGCCCTCTGCTACATCCTGCTGCCTGTCTCCTGAGGACGTGTGTGCGCTGCAGTGCTGAGGGTGGGGTGGTGTTCAGTGCTGGGGCCCCTGCAGCGGGGTGTAGCGCACGCCTGGAGGCCCGGGGATAGCTGTCCTGTCCCCAGGCGGCAGACTGTCCGGCCCGTCTTGCTGCTGGCCGGGTGCGCGGTCCCCAGGGTGTGTCCGTCCACTCAGACGCAGCGCTCTCTGTGAGAGCTAGTGTGGCCGGAGACGAGCCTGGTGCTGGTGTGTGTGGGGGGAGGCCCTGGGAGGCCCCTTCAGGCCCCCATCTGCTGATCTCACTGTGCTCCTGGTCTCGGACAGGTGGCCTGGGGCTCCCAAGGCCCAGCCCGTGGCAGGCAGCTGCACCTCTGCCCTGGGCTTGGGCCCTGGAGCCCCACACCTGTGCTCTCCCGACAG
Seq C2 exon
TGGATTGAGAGAGTGGTCGGCTGGCTGGGCAAGGTGTTCCTGCAGGACGGCCCCAGCAGGCCCGCGTCCCCGGAGCCGGGCACCACGCTGCGCCGCTGGCGGTGCCACGTGCAGAGGTTCTTCTACCGCATCTACGCCGGCCTGCGCATCGAGGAGCTCTTCAGCATCATCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046223:ENSBTAT00000064659:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCTCAGTCTGCTGGAG
R:
CGGATGATGCTGAAGAGCTCC
Band lengths:
304-1122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development