HsaINT0007887 @ hg38
Intron Retention
Gene
ENSG00000176248 | ANAPC2
Description
anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:19989]
Coordinates
chr9:137184913-137186356:-
Coord C1 exon
chr9:137186224-137186356
Coord A exon
chr9:137185088-137186223
Coord C2 exon
chr9:137184913-137185087
Length
1136 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CACTAGCGTTCTCCTGACAGTGG
3' ss Score
6
Exon sequences
Seq C1 exon
ACACAGGCTCAGTCTGCTGGAGCGGGTCAGTGCCGAGGCTGTGACCACCACCCTGCACCAGGTGACCCGGGAGAGGATGGAGGACCGTTGCCGGGGCGAGTACGAGCGCTCCTTCCTGCGTGAGTTCCACAAG
Seq A exon
GTGAGGACCCCTCCCTTGGGCTGTGCCCCGCTGGAGACAGGGGAGTAGGTTTCTGGCAAACCTGACACCTGGCTTCAGAAGCATCCAGAGCACGGAGGCCTGGGTGGGCCCAGACCGGGTGGTGGCTGGAGCTGTCTTGATGTGGGGTAGAGACCAGTACTTCTGGGCCCTGGTGATAGCGAGGACGCATCTGAGGTGCGCTCTTCGGATCTGCGCAGAATCCCATGGCTGCAGGCGGTATCGGGCCAGGATCCCGAGGGGGCTACCTCAGGCAGGTGTGGCGAAGCTGGGCCCACCAGAGGAGCCACTGAATGGATCCCCTTCTCCTGTTTGCTGCCCTACTTGAGTGTGGACTCGCTTGGCCGGTCCCTAATGGACTGACCTACAGCCAGCCTGCACCACAGCGGGGAGCGAGACACCCTCACATGGGGCCTCCAGGCACCTGTGCTGTTGGGGTGTGGTCTGGGGCTCTGCTCTGGGCTCCCGGAGCCATAGGGGAGCTGGGCCCAGCCATGTGGGTCCCCCCATCCTGTTCCCATGTGTCACCTGTCCTTTCCTCAGTGTTTCAGAGTCCCCCTACTGAGGTGCAGATTGGCTGTGATGTTGGGTTTTCAAAGAGGGAGGGTGTCCCCAAAGCGGTGGGCAAGAGTGGGTAGTAGGGTGGAGAGGGTGAACATCCGTGCGGTCTTGCCACTGGGTAGCAGGTCTGTGGGGCATGAGCACGCCTGGGCCCCGCGGCGGAATTGCCACCTAGAGGTTTGTGCTCGCCTGGGCCCCCCGGCTGGTCTCAAGGGCGTGTTTATCCATTTAAGTGGGGGCAAGTGTGCCCACCAGGCACAGCGCACAGGTCGTGTGTGTCTGTCATGTCTCACGCTAGGGTTGCTGCTGCCAGTGATAAGTGTGGGCACTGGCGCGTGTGAGAGGCACGAAGACTGCAGGGGGGCCGGGACGTCGCCTTTTGGGCCATCACCCACCCTGCAGGTTTTGATGTGCTCCAGCCTCCAGACGCAGGTGGCCTTCGGGCTCCCCTCGGTCCCGGCCGACAGGGTGGGTGGCCGTGAGGCTCCTCCCAGCCTCTGAGTCAGCCCGGGGCTCACCATGCCTCCCTGCAGCTCACACTAGCGTTCTCCTGACAG
Seq C2 exon
TGGATCGAGCGGGTGGTCGGCTGGCTCGGCAAGGTGTTCCTGCAGGACGGCCCCGCCAGGCCCGCATCTCCCGAGGCCGGCAACACCCTGCGCCGCTGGCGCTGCCACGTGCAAAGGTTCTTCTACCGCATCTACGCCAGCCTGCGCATCGAGGAGCTCTTCAGCATCGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176248:ENST00000323927:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCTCAGTCTGCTGGAG
R:
GACGATGCTGAAGAGCTCCTC
Band lengths:
302-1438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development