GgaINT0126145 @ galGal3
Intron Retention
Gene
ENSGALG00000008625 | F1NLT0_CHICK
Description
NA
Coordinates
chr17:2189066-2191451:+
Coord C1 exon
chr17:2189066-2189198
Coord A exon
chr17:2189199-2191276
Coord C2 exon
chr17:2191277-2191451
Length
2078 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CTCTCCCTCTGCTGTTGCAGTGG
3' ss Score
8.49
Exon sequences
Seq C1 exon
CCGCCGGCTGAATTTGCTGGAGAGGGTGAGTGCTGATGCTGTGACCACCATCCTGCACAGGATGATCAAGGAGAGGATGGAGCGACGATGCCGGGGTGAATATGAGCACTCCTTCCTGAATGAGTTCCAGGAG
Seq A exon
GTAAGGGATGCCCTGGCTTTGGAGGTGTGGAGCTGCTCCTGTTCCTGCCACTAAGTTCCCAGCCCCACCTCAATTCCCTGGTCCTGGGCTGTGACTTCTACCACCACTGACAGAAGAGGAGTGGTTAAAACTTAGCAGTTTAGATTAATGCTGGAGGAGAGGGTCTGCTCTGCCCTACGCACAGCACCTCGTTCTGTTTCACCTGGCCGTGTCCCCATTGGCCCCATCTGCAGTACTTTGTCCAGGCCTGGGGCCTCCAGCACAGAAAGGCATGGAGCTCTTGGAGCGGGCCCAGAGGAGGCCACTAAGGTGGGCAGAGGGCTGGAGCACCTCTCCTGTGAGGAAAGGTTGAGGGAAATGGGCTTGTTTAGCTTGGAGAAGAGAAGGCTCCGGGGAGACCTCATTGTGGCCTTCCAGTACTTGAAGGGAGTGCATAAACGGGAGGGGGAACGGCTGTTTGTGAGGGTGGATAGTGATAGGACAAGGGGGAATGGTTTTAAACTGAGACAGGGGAGGTTTAGGTTGGATGTTAGGAGGAAGTTTTTCACACAGAAGGTGGTGACGCACTGAACAGGTTGCCCAAGGAGGTGTGGATGCCCCATCCCTGCAGGGATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGGCTGCTGGTTGGCGACCCTGCACATGGCAGGGGGTTGGAACTGGATGAGCATTGTGGTCCTTTTCAACCCAGGCCATTCTGTGATTCCATGAATTTCGATCATTTTGGCCATTCTATGATTGAGGAATTTCGGTGGTTCTGTTCTAGCAGTGATATGAGGGCAGTGTGCCATGCAGCTGCAGCCAGCCCTCCCCGTGTGTAGGTGGGCCCATGACTTGAACTTGTGGCTGTTTTCTGTCCTGAATTTCCTGCATCCCTTTAAAAGAGGAAGTGACGCTGGCACATGCTGTTCTTGCCCTGAGTCCTTCCTTGCACCTCCTCAGTTCTCTTGCTGCTGCCTTGCACCAAGTCTGTGTCGAGCTCTTTGTTCTGTATGACCTTAAAGCTCTCCTCAAGGTTATGGCTGCTCTGGGACATGGGCTGTGCTCTGTGCTCTTTGTTCCTTGATGCATGGCCTTACGTTGGTCTGCACTGACGAACAACGTGTGAGGTCAGGTTGCCATGTGAACCAGGCAGCTCCGTGCTGTCGTCCTGGTTTCCTCGCTGTGTGCCACGCTGGGTACTTTTGTTGCCTGCAAACACTGGCAGTGATTTGGTGTTTACTTCCCTGCAGTTGCTGTGCAACACTTTCTTCTCTGGCCCTGCTGCAGAGGGCACTCAGAGACAAACCTCTAGGTTTGGGTAAAGGTGTTGCTCAGCGTTGAGGTGCTTTGCATCGATGGTCACCCTTTCCTTTTGTTCTTTAGGAGAATGCTTTTCAGCTTTCCCAGTATTGCCCAGGACTGGGGCTTGGGTGCTCTGTGCTGCAGCAGGTTCTTCTGCCTTGTAGTTCTATGGGCAGAACTCACGCACTCCCCCAGTCCTTGGTCAAGCAGACAACCAAGCATTAACATGGGCGCACCACACCCAAACTGAGCGTTTTTCAGGCTGCCTAAACCTGGTTATCAAAAAATAATAGCACCTGATAACTATTAATACTCAAGTACTACCCCAGGTAGTGTTACGCATTTGCCATCTTAAGCAGAATGTAAAGCCATTTGTTCTGAATATCTGGATATGGCAGTTAGGTGCATTTGAATTACGACAAATACTCATTTCTCCGTAGAAAATTAAGTCTGCGGTATACAAACTCAGCCTCTGGTGCCCTTCGATCAGGTTGTGGGATATCGTTATGAAGTGGCTGGGTCGGTGCTTGGGGTCTTGTCTCAGTGCCTGCGTTTGGTTGGTAGGTCTGGGAGTGTTTGGGGATGGCTTTCAGGATTTCAGGAACCACCATAGTGCTGGGCTGAGGGTGCTGAGATGGGCACTTTGCTCCTATTGAGAACAGTTCTGCAAGCATACATTAAAAGCCAGCAGAGCTCTGCAGGGTGGAATGTCCTGCCGTGCAGAGGCGTCCTCCATCCCTGTGCTCTCCCTCTGCTGTTGCAG
Seq C2 exon
TGGATCGAGAAGGTGCTGGGCTGGCTCAGCAGAGTGTTCCTGCAGGACGGCCCCTTGGCTCGCCCCTCTGCAGAAGCCAGCAGCACCCTGAGGCGCTGGCGGTGCCACGTCCAGAGGTTCTTCTACCGCATCTACGCCAGCATGCTGATCGAGGAGCTGTTCAGCATTATTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008625:ENSGALT00000014053:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]