BtaINT0009022 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3N1P6]
Coordinates
chr11:105907708-105908414:-
Coord C1 exon
chr11:105908233-105908414
Coord A exon
chr11:105907850-105908232
Coord C2 exon
chr11:105907708-105907849
Length
383 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
CCCGTGTGCCTGGCCTCCAGGGA
3' ss Score
8.57
Exon sequences
Seq C1 exon
GACGCGGGAGGACACAGTGCGGCAGATCGTGGCGGGGCTGACGGGGGACTCGGATGGGACGGGCGACTTGGCTGTTGAGCTGTCCAAGACGGACCCTGCGAGCCTAGAGACCGGGCAGGACAGTGAGGACGACTCTGGGGAGCCGGAGGACTGGGTCCCTGACCCTGTGGACGCAGATCCAG
Seq A exon
GTCAGCGTCAGGCAGCCCTGCGAGGCCTGGGGTCGTAGGGGGGCCCAGTCGGGTCGGAGCTCTCGCCTCCAGGTTGTCGCTGCACGCACTCGAGCTTTAGGAGGTCCTTGGTCCATGCCCGACCTGGCCTGGTTCCCCAGGGTGCTTACCCTGGCTGGCTGGGCCCACGTGGACTGTGGCCCCCATCAGAGCCCTAGGGGGTGCCCTGCCTGCCCCCCCACCCCGCCCCCTGGCCCTGCTGCTTCCGCTGGAGGAGGGGCAGGTTTCAGCACGTCTGCACCAGGGACCCAGAGCCAGGCCTCACGCGGGGGTGCAGTGGGTAGGCTACTCGGCGCAGACGGTGCCGCTTCCACGTATGAGGTGCCCGTGTGCCTGGCCTCCAG
Seq C2 exon
GGAAGTCCAGCTCCAAGCGGCGCTCCTCAGACATCATCAGCCTGCTGGTCAGCATCTATGGCAGCAAGGACCTCTTCATCAATGAGTACCGTTCGCTGCTAGCCGATCGCCTGCTGCACCAGTTCAGCTTCAGCCCTGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046223:ENSBTAT00000064659:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(22.0=100)
A:
NA
C2:
PF0088817=Cullin=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCGGGAGGACACAGT
R:
CTCAGGGCTGAAGCTGAACTG
Band lengths:
322-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development