HsaINT0007891 @ hg38
Intron Retention
Gene
ENSG00000176248 | ANAPC2
Description
anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:19989]
Coordinates
chr9:137180788-137181862:-
Coord C1 exon
chr9:137181681-137181862
Coord A exon
chr9:137180930-137181680
Coord C2 exon
chr9:137180788-137180929
Length
751 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
CCCTGCCCCCACCATGCCAGGGA
3' ss Score
6.06
Exon sequences
Seq C1 exon
GACGCGGGAGGACACAGTGCGGCAGATTGTGGCTGGGCTGACGGGGGACTCGGACGGGACAGGGGACCTGGCTGTTGAGCTGTCCAAGACCGACCCGGCGAGCCTGGAGACAGGCCAGGACAGTGAGGATGACTCAGGCGAGCCAGAGGACTGGGTCCCGGACCCTGTGGATGCCGATCCAG
Seq A exon
GTTAGCTTGCCCCACATGGTCCCTTTCACCAGTGTGGGGGGCGCTTCAGCCAGGCCGTCCGCTCTGGACTCATCCCTTGTCACAGAGCTTGGCTGTGTCAGGTGTCGCTAGTGTCTCAGAGGCTTGAGGGTGTCAAAGGTCAGGGCAGTGCTCCGCCACCTGCCAGCCTGGGCAGGCCGGTGATGGGCTGTTTTCCTCTGTGGCTGGTCACTCTGGCCGTGGGGGATGCCCTGCCTCCCACCGCTTGTGAGCTGTGGGGTGTCCCTGCCCCGCCACTGCACCTGGCAGAGGAGTGAAGATGTGGGTGACCCCTGAGCTCTGTACTGATTTGGGCCTCAAAGTCCCGTTAGGGTGCCAGCTCCTGCTCAGAGCCCATCTGTGCCTGGCCCTCGTCTGCGAGGGCTCTGAGGGCTATGGGGCCCAGGCCTGGCCCCTGCCCTGGCACAGATGGTAAGTCTTCAACACATCTTTAGTCTCTCTCAGAGGAAAACCCCAGGACCTTTGGCTTGTCCCCTAAGCCTGCATGGGAGTCCCGGAAGGTCCCTGTGGGGTGAGAGGGGCTGGGGATTGAAGCTGTTGCTCCAGGACCTGACTCCAGGTCTCCCGGGAGGCTCAGGGCTGCTCCCAGCCTCGAGGGCCTTCAGGAAGAGCCATGCTGGGCTGTGCCGTCTGGCTGGGCGGGATGGGAGGAGGGCGGCCCTGTCCTTGCCCAGGTGCCTGTCAGGTGACACCCCTGCCCCCACCATGCCAG
Seq C2 exon
GGAAGTCGAGCTCCAAGCGGCGTTCATCGGACATCATCAGCCTGCTGGTCAGCATCTACGGCAGCAAGGACCTCTTCATCAATGAGTACCGCTCGCTGCTGGCCGACCGCCTGCTGCACCAGTTCAGCTTCAGCCCCGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176248:ENST00000323927:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(16.0=100)
A:
NA
C2:
PF0088817=Cullin=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCGGGAGGACACAGT
R:
GGGCTGAAGCTGAACTGGTG
Band lengths:
318-1069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development