RnoINT0017214 @ rn6
Intron Retention
Gene
ENSRNOG00000011295 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:RGD Symbol;Acc:1305546]
Coordinates
chr3:2495574-2496583:+
Coord C1 exon
chr3:2495574-2495755
Coord A exon
chr3:2495756-2496441
Coord C2 exon
chr3:2496442-2496583
Length
686 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
AGCTCCTCTGTACTGTGCAGCAA
3' ss Score
5.55
Exon sequences
Seq C1 exon
GACACGGGAGGACACAGTACGGCAGATTGTGGCTGGGCTAACCGGGGACTCGGATGGGACTGGGGACTTGGCTGTTGAGCTGTCTAAGACTGACCCGGCCTGCCTGGAGACCGGCCAGGACAGTGAGGATGACTCTGGCGAGCCCGAGGACTGGGTCCCTGACCCTGTGGATGCTGATCCAG
Seq A exon
GTCAGTGCCTATTGGCCTCACCCGGCCTTTTCCTGGGTTTCTTCAGTGGTCTCTTGGGTTCTGGTTATGGATGTTGCTACCCAACCCTGATTATATCAGAGGCAGCCATTGCCTCAAACTTGGGGTGCGTGTGTGAGAGGTCAGGGCCATGCGTAACACTAGCTGGTTTGTTATATGTACCTCACTGGCTACCTTAGCTAGCTATAGAAGGTGCCTTTGTGGGTTATACCTGAGAGACCAGGTTCATAGGAAGTCTGCATACCCCACTCTGCTGTGATTTGATCCTGATTCTCATGTATTAAGGTGGGATTCTCTGCCCAGGTCCCATCTTTTGCTTGACCATACTCTGCTGGGTTATCATGGGCTGTGGATTCTTTGTCCTGCTGAGGTCTTAGCATGAACACAGCATCTTCAACCTTTTAGAGGAAAACCTTTGTTCTCTTCCTTATGGCTGACTGAGGATCCTTGTGAAACAGGAGGCACTGTTTATCAGAACAGTTGCCTTAGGAACCAACCCCAGCTCTGCTGGGAGACATTAACCCCAGCTGCCTGGGGCATTTAGAGCAAGCCCCCCCCCCCCCCCGCCCCGGGCCGTGCAAGACTGCTGTATCCAGCAGGTGAACTCTGAGGTGTCACTTTCCTTGTCAAAGTGCAGTGGTACACATTAGCTCCTCTGTACTGTGCAG
Seq C2 exon
CAAAGTCAAGTTCCAAGCGACGCTCTTCAGACATCATCAGCCTGCTGGTCAGCATCTATGGCAGCAAAGACCTGTTTATCAATGAGTACCGCTCCCTCCTGGCCGATCGCCTCCTCCACCAGTTCAGCTTCAGTCCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011295:ENSRNOT00000015099:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(16.0=100)
A:
NA
C2:
PF0088817=Cullin=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACACAGTACGGCAGAT
R:
CTCTCCGGACTGAAGCTGAAC
Band lengths:
318-1004
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]