BtaINT0009047 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MXP8]
Coordinates
chr7:45563931-45565499:-
Coord C1 exon
chr7:45565391-45565499
Coord A exon
chr7:45564059-45565390
Coord C2 exon
chr7:45563931-45564058
Length
1332 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CCGACTTCTCCCATCCCCAGCAC
3' ss Score
7.69
Exon sequences
Seq C1 exon
GACTGTCCTCCAGGGGCCATGCCCTTTCGAGACCTCCAATGTGCCCTCTACAATGGCCACCCTGTCCTAGGCACCCAGAAGACCTACCAGTGGGTGCCCTTCTATGGTG
Seq A exon
GTGAGTAGCCCAGCCTCCTGTTAGTCCAGAGGAAACAACTCAAAACTGGCCAGGAAAAGTTGGCTTCTAAAAAGGAAGAGGAACTTGGAGGGTTGCAAGAAGGGGGCATTAGCACTGGGGCTTTGAAGGATATGTAGGAGTTGGTGAAGTGAAGCAGAGAAAGCATGTGGAGTTGTGAAGCAGGGGCAGGAGGAGGAAGGGTCTATCCTGCATAGGGTTGAACACCAAGCTGAGGATTTACTGGGAGTTGTATCCAGAGGCCAAGAGTTCTCAAACTTATACCAGTAGCAGGAAATGTTGTTGAGCTGAAAATAGCGAGTTATATAACTGTGTGCCCAGGGCAGCGTGCCTCCAGATTTAAGGGAAACAGGCAGCTTCAGACGCCACGGTGGGGGTAGACACAGATAAGAAAATCCTGGAATGGAGAAAGTTCCAACCGTCAACTCATGTTTTTTTTTTTTTTTCCTTCACCCTAAGAATTGGAGGAAATTTGCCATGATCTCACTCCCACAGAGGCCCGCCAGGGCCAGCTTAGGCTCTATTCCAGCAGGGTCTGCCAGCCAGCCTCAGGAAGTTGGGAGATGGAGGGAGTTTGAGTGGGGGTGGGGTGAGGGAGCAGGAATCAGGGCTGTGAGCCTGTGGGTGTGATCAGACTATCCATTGTGCCCCGCTGCCAGGCAGAGGGGGAAACAGAGTCCCAAGGAGGGACAGCAACATATTCAGGATATGCAGGGCTCAGCACTGAACAAATACTTTTTATTGAGCACCTGCCGGGTGTAGGGTCCAACTGCTGAGTAAGTTCTGCCCACCACTCTACCCAGAGCCTAGAACATTGTCTGGGAAATGTGCTTGATGACTGTTTGTGGAATGAACATATGAAAGAATGAGTGAAGAATAGGTAATGACGTTAATATTGTGTGTGCATGCTCAGTCGTGTCCAACTCTTTGCAACTCCATGGACTGTAGCCCGCCAGGTTCCTCTGTCCATGGAATTTTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCGGATGACGTTAATAATGGGTCCCTAGTATTAAGACTTAACATGAATGAATGAATGAATGAACGAACGAATGAATACATTCTGGCCCAGTATACGAGTCTGGGACAATCCCAGGGAACGGGAAGCAGAAATGCCTAAGGTCCAGTCCATGCTCTGCCTCAGCCTCCATGTGTGGCTTTGGCTGAATCTCTGAGCCTCATATGCCCAAGGGAATGGCTGCCTGGGGAAGACTGGCAAGGAGGGAGCTGGAATTCAAATATAAATCCCCCCACATTCCACCGACTTCTCCCATCCCCAG
Seq C2 exon
CACCCAACCACTGCGACCTCAACTGCCTAGCGGTGGGGCACGACTTCTATCACAGCTTCGGTCGCGTACTGGACGGTACCCCCTGCAGTCCGGGCGCCCAAGATCTCTGTGTGGCTGGCCGCTGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046263:ENSBTAT00000065686:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.1=2.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTCCTCCAGGGGCC
R:
CGGCCAGCCACACAGAGAT
Band lengths:
230-1562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]