RnoINT0013689 @ rn6
Intron Retention
Gene
ENSRNOG00000033787 | Adamtsl5
Description
ADAMTS-like 5 [Source:RGD Symbol;Acc:1305607]
Coordinates
chr7:12232321-12233723:+
Coord C1 exon
chr7:12232321-12232429
Coord A exon
chr7:12232430-12233595
Coord C2 exon
chr7:12233596-12233723
Length
1166 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACCACCCCTCCCGCCCTCAGCGC
3' ss Score
9.89
Exon sequences
Seq C1 exon
GACTGCCCCCCAGGGGCCATACCATTCCGAGACCTGCAGTGTTCTCTCTACAATGGCCACCCCGTCCTGGGCACCCAGAAAACCTATCAATGGGTGCCCTTCCACGGGG
Seq A exon
GTGAGTAACCTGATCTCCTGGGGTTAAAAGGAAAATGAGAATCTTGAGAGGAGTTAAGAAATACTCTGAGAGGTGGGCATTGGAATGGGGTTTTAAAGTATATGTAGGAGTTGGTGAAGGAAGGACACGGTCCCTTTTGCATAGGGTCAACTCCAGGCTGAGGACTGACATAGACTTCTATCCAGAGGCCAACAGTTTTCAAACTGATCCCACTAACAGGAAATGTTGTTGCACGGAGCTGAAAATAGCAGATTATATAACTGGGTGCCCGGGGCAGCACGCCTCCAGATTGAAGGGAGACAGGCAACTTCAGCCGCCAGAGTGGTGGCGACAGATGAGAACAGCCTTGAACGCAGGGCATTCCATCAGCTCCGGGCCTCCTTGCTTTCACCCCATCCCACCTCCACAGCGGCCCACTACATTGGCCTTGTCCCCCCAGCCTGCTTCCAAGTGGTTGAGATAAAGCCTGCGGGCTTCATCTGACAGGCAGGGGAAACTGAGGTACACTGCAGGCCAGTGGTACAGTTGGGCTCCCGGGCTACCGAACCTATACAGGAAGAGCAGTTTATTTGGGCCTGAGTGGGAGGGCGGAGCATGGAGGGAGAAGGGCGGGGTCCAGGAGGAGCCTGGCCTGGATGGAAGGCAATGGGGGTGTGGCCTGAGAGGGGAAGGCATTGAGGGAAGGTGCTAGAGAAATGGAACGAGGAGGGAAGGAGAAGACTCGAGGTAGGAAAATGTATGGGCTGGTGTGGTGGCTTACACCTTTAATGCCAGCACTGGAGAGGCAGAGGCAGATGGCCAGCCTGGTCTACAAAGTTCTCAGACAGCCAGGGATATGTACAGAGACCCTGTCTCAAAAAGCAAGCAAGCGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAAGCAAGCAATCATGGCCTGGAAAGAGGAGGGTGGAGGCGGGCCATGAAGAGGGCAGAGCCCAGAGGTGAGAAGCGAGAAGTGATACCCGGTAAGTGTTGGCGCCTGTAGGGCTTTAGGTTGAGCTTGAGCTACAGTGAGCTAGCTGGCTGTAGGGACTGGCGATGGGATGATAGGCCCCGACTCACCACCCCTCCCGCCCTCAG
Seq C2 exon
CGCCCAATCTGTGTGACCTCAACTGCCTGGCTGAAGGCCACGCCTTCTACCACAGCTTTGGCCGCGTGCTGGATGGCACCCCCTGCACCCCGGGGACCCAGGGTCTCTGCGTGGCAGGCCGCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033787:ENSRNOT00000060811:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.1=2.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGCCATACCATTCCGAG
R:
TGCCACGCAGAGACCCTG
Band lengths:
214-1380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]