MmuINT0011592 @ mm9
Intron Retention
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:79806344-79807686:-
Coord C1 exon
chr10:79807578-79807686
Coord A exon
chr10:79806472-79807577
Coord C2 exon
chr10:79806344-79806471
Length
1106 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACCACCCCTCCCGCCCTCAGCGC
3' ss Score
9.89
Exon sequences
Seq C1 exon
GACTGCCCTCCAGGGACCACACCATTCCGAGACCTGCAGTGTTCTCTCTACAATGGCCACCCTGTCCTGGACACCCAGAAAACCTACCAGTGGGTGCCCTTCCACGGGG
Seq A exon
GTGAGTAGCCTGATCTACTAGGGTTAAAAGGAAAAAGAGAATCTTGCGAGGAGTTAAGAAATACTCTGAGTGGTGGGCATTGGAATGGGGTTTTAAAGCATATGTAGGAGTTGGTGAAGGAAGGACACAGTCCCTTTTACACAGGGTCAAACTCCAGCCTGAGGATTGACATAGAGTCTTATCCAGAGGCCAACAGTTTTCAAACTGATCCCACTAACAGGAAATGTTGTTGCACGGAGCTGAAAATAGCAGCTTATATAACTGGGTGCCCGGGGCAGCACGCCTCCAGATTGAAGGGAGACAGGCAGCTTCAGCCGCCAGCGTGGTGAAGACAGATAAGACCAGTCTAGAACACAGAACATTCCATCAGCCCTGGGCTTCCTTTTTGCCCCATCCCACCTGCACAGAGTTCCACTAGGTTGGCCTTGTCCCCAGCAGGGTCTGCCAGCCAGCCTGCTGCTAAGTGGCTCAGATAACAGCTGTGCACCTGCGGGTTTCATCTGACAGGCAGGGGAAACTGAGGTACACAGCAGGCTAGCGGTACAGTCAGGCTCTGGGTCTAGTTAATTTGGGCCTGAACGGGAGGGCGGAGTCTGGAGGGAGAAGGGTGGGGCCAGGGAGGGGAGGGGCCTGGATGGAGGAGAATGGGGTTGTGGCCTGAGAGGGGAAGGCCTAGAGAGAAGATGATATAGAGGTATGACTTGGAAGAGATAGAGAGTGGAGAAATGGAGCGAGGAGGAAAGGAGAAGGAAGACTCAGGGTGTAGGAAAATGTATGGGCTGGTGTTGTGGCTTACGCCTTTATTACCAGTACCGGAGAGGCAAGAGGCATGTGGCCAGCCCAGTCTACATGGTTCTCGGACAGTCTATCCGTTCTCGGACTCTATCTCAAAAAAAGAAAGAAAGCAAACAAGCACACTGCCTAGAGAAAGAAGGGTGGAAGTGGGCCATGAAGAGGGCAGAGCCCAGAGGAAAAAAAGCGAGAAGTGGGGCCTGGGAAGTGTTGGCGCCTGTAGGGGTTTAGGCTAAGCCTGAGCTGCAATGAGCTGGGTGTAGAGACTGGCGATGGGCTGGAAGCCCCAGACTCACCACCCCTCCCGCCCTCAG
Seq C2 exon
CGCCCAATGTGTGTGACCTCAACTGCCTAGCTGAAGGCCACGCCTTCTACCACAGCTTTGGCCGCGTGCTGGATGGCACCCCCTGCACCCCGGGTACCCAGGGTCTCTGCGTGGCAGGCCGCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-Adamtsl5:NM_001113548:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.1=2.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGGACCACACCATTCC
R:
TGCCACGCAGAGACCCTG
Band lengths:
218-1324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: