BtaINT0009074 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BG97]
Coordinates
chr11:98512231-98513391:+
Coord C1 exon
chr11:98512231-98512285
Coord A exon
chr11:98512286-98513289
Coord C2 exon
chr11:98513290-98513391
Length
1004 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCCTGTCCTTGGTGGTGCAGACA
3' ss Score
6.14
Exon sequences
Seq C1 exon
GAAGTCCACAAGACTGTCTCCACACGCCTGAACATCATCAGCACCAGCCTGCATG
Seq A exon
GTGAGTTCTAAGTATCCCCGAGGTTCCAGGGACTGAGGTCAGAGTGGGGCGTGATGGACGCTCAGAGGACCCCAGAGAGCAGGGTCCACAGCTACATCTTCCACATGGAGAACATTTGCTTGTGACCACCCCATGGGACCATATCCCAGGCCTTTGGCTCTTCTTGATCCCCAGGGTGGCTGGCTGACCTTGCTGGGAGATGGAGCCTTCTGGAATCGGGACTGGACAGGACTTGGGGGCAGTGCTTGTCTCTCCTTCCCTAAGACCCCTAGGGTGGAGGATGCCCCTCAGCCCAGCTCCCCCCAACCTGTCTTAGTTCCCCCTGGGCCCAGGTGCCCCCTGGGCAGGAGAGTCCCTGACGCTGAATGCAGGTGGGAGAAACATCGGCCCCTTGGCCATCCTACCTGGGCCTGGATGGAGCCCCTGCGCCCAGCCTACAATCAAGAAGGCAGGCTAATGACCCCACTGCAGGGATGGGAACCCACAGGCCTACGGCCAGGCTGCCTGGCCCACAGTCAGACAGGCATCAGGAGTGCAGAAAGAGTGAAGCTTGGGAAAACCCAAGAAGAGAGCCAAAGGGCCCTCAGGGGGCACTCTGGCTTCTGCTTTGGTAGCGGGCTGAGAGGAGTAGGGACTGACCTAAGGTCACACAGCGGGACTCTGGACTCTCAGGCCCCACTCACACTTTGCTCAGATTATACCATCCGGCCTCCCTAAAAATGTATCTCTACCAGCCTTGGGAGTCAGAGGCATGGCCCCAAAGGCCTGGCTGGGCCCTTTTGAGGGCATGCTCCTAACAACACAGCTTCATGCCACGTGTGGGTGTGATGATCCCATTGGCTAGATGAGGAAATGGGTTCAGAGAAGTAAGGGTCAGTGGCTGAGCTGAGACTGGCACCAAAACCTGCACTCCTGGCTGGCACAACGGGGCGGGGAGTGGGGATGGGAGTTGCAGGGAGGAGACAGCGGTGCTGACCGCAGCCATCCTGTCCTTGGTGGTGCAG
Seq C2 exon
ACAAAGGCCTCGTCCTACCTGCCGTGCTGGGCATCACCTTTGGTGCCTTCCTCATCGGGGCCCTGCTCACCGCCGCGCTCTGGTACATCTACTCGCACACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046303:ENSBTAT00000011846:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138581=DUF4199=PU(48.4=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development