MmuINT0057434 @ mm9
Intron Retention
Gene
ENSMUSG00000026814 | Eng
Description
endoglin [Source:MGI Symbol;Acc:MGI:95392]
Coordinates
chr2:32535801-32536817:+
Coord C1 exon
chr2:32535801-32535855
Coord A exon
chr2:32535856-32536715
Coord C2 exon
chr2:32536716-32536817
Length
860 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GGCCCTCCTTTGTCACACAGGTA
3' ss Score
8.21
Exon sequences
Seq C1 exon
GAAGTCTACAAGACAGTCTCCATGCGCCTGAACATCGTCAGCCCTGACCTGTCTG
Seq A exon
GTGAGCAGAGAACAGGGCTGGGAATGGAGCCCAGATATGGGGCCCTTGGGAGGAGAGGAGGGTTTCTCAGGCCCAGCAGCCCGAGGAGCTCACAGTAAGATGCCAGGTGCCATAGACAGCCCTCCACTCTCAGACCCCTCCTGGGCCTCATCTCTGTCCCGTTAGTCACTGGTTGCCATGATGGAGGACTTAACCTCCTGGACAGAACATAAGGCACCTTAGCTATGGTATAAGACCCCACATTCCTTGACATCTCAAGGGTAGAGGAAGCCCCTTGAGCCTAACACCCTCTGGTCTCTATTGTTCCCCTGGGCCCAGGCACTACCAGGCAAGAGAGTCCTGTTGCTAGGGGCAGATACAAGCGGTGTAGCCTAGGATGGGCCTAGCCTAGGGCTGAGAATGCAGGGCTCCTAAACTCCCTGCACAGACAGTAAGTCTAAGGAGACTAAGGGCCCAGAACTATGTAGAAACAGGAGGGAAGCCTGCAGTAACCCGAGCAGCACTGGTTTTAAAAAGATGCTCTGGCCCATTTGAATCTGGTGTAAGGTGCAGAGGTGGGGCGGCTGGTTGGAGAGGTCACACAGCATGGCAGAGCAGGCCCCTTCATTCTTTGCACCCACAACACCATCCATAAAGGAATTACCTGCTGGGCTTTGGAGACAGGAGGGTGGCCCAAAGAGCCTGGCCGGCTGGGCCCTCGGCTTAGTACCGAACTAGATGAAGAGACCTCTGTCCAGAGAAGTCGAGTCACTGACCCAGTTGAATCTAGCTAATACCCGTGACCAAGGCCAGCATGAGAGGGTAGGGACAGGCCTGAGGCCACAACACACTGACTATCTTGGCCCTCCTTTGTCACACAG
Seq C2 exon
GTAAAGGCCTTGTCCTGCCCTCTGTACTGGGTATCACCTTTGGTGCCTTCCTGATTGGGGCCCTGCTCACAGCTGCACTCTGGTACATCTATTCTCACACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026814-Eng:NM_001146348:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(3.0=21.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: