GgaINT0124803 @ galGal3
Intron Retention
Gene
ENSGALG00000005060 | ENG
Description
NA
Coordinates
chr17:5517592-5517845:+
Coord C1 exon
chr17:5517592-5517655
Coord A exon
chr17:5517656-5517741
Coord C2 exon
chr17:5517742-5517845
Length
86 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGC
5' ss Score
4.69
3' ss Seq
ACGGCCTCATCCCACTGCAGACC
3' ss Score
7.36
Exon sequences
Seq C1 exon
AACAACACCATCTTCGAGAAGGTTTTGGAAGTGAAGGTGAAGGACGTCTGGCGGCTGCCCAACA
Seq A exon
GTGAGCTGGGGACACGGGGCAGGGTGGGGGGACACTGCTGGGTCTGAGGAAGGTACCCCCTCACTGACGGCCTCATCCCACTGCAG
Seq C2 exon
ACCAAGGGCTGGGGCTGTCCGCCGTGCTGGGCATCACCTTTGGAGCCTTCCTCATCGGCGCACTCCTCACTGCTGGGCTCTGGTATATCTACTCGCATACCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005060:ENSGALT00000039898:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138581=DUF4199=PU(29.2=63.6)
A:
NA
C2:
PF138581=DUF4199=PD(68.8=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACACCATCTTCGAGAAGGTT
R:
ACGGGTATGCGAGTAGATATACCA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]