RnoINT0054947 @ rn6
Intron Retention
Gene
ENSRNOG00000050190 | Eng
Description
endoglin [Source:RGD Symbol;Acc:1593188]
Coordinates
chr3:11715512-11716565:+
Coord C1 exon
chr3:11715512-11715566
Coord A exon
chr3:11715567-11716463
Coord C2 exon
chr3:11716464-11716565
Length
897 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ACCCTCCTTTGGTCACACAGGCA
3' ss Score
7.8
Exon sequences
Seq C1 exon
GAAGTCTACAAGACTGTCTCCATGCGCCTGAACATCGTCAGTCCTGACCTGTCTG
Seq A exon
GTGAGTGGGGAACAGCCCTGGAATGGAGCCCAGACGCTGGTGGGGAGATGTGGCAGTAGCCCTTGGGAGGACAGGAAGGTTTCTCAGGCCCTGCAGCCTGAGGAGCTCGCAGTAAGATGCATCTTAACAGGGGAACACTGCTGAGTGCCACGGACAGCCTCCCAGCCCTCAAACCCTCCTGGGCCTCATCTCTGTCCCCTCAGTCACTGGTTCATCTCTGTCCCGTTAGTCACTGGTGCACCTTGATGGAGGACTTGACCTCCTGGACAGAACATAAGGGACCTTAGCTATGGTATAAGGCCCTTCATTCCTTGACACCTCAAGGGTGGAGGAAACCCCTTTGGCCTGATAACGTCTAATCTCAAGAGAGTCCTTATTGCTCGGGGCAGAGACATGCCATGTAGTCTAGGACGTCATGTACTCACCCCCAGCCAGACTGAGAATGCAGGGCTCCTAAACTTCTTGCGCAGACAGGAAGTCCTGACTAAGGGCCCAGGGCTATGTAAAAGACGGGAGTGAAGCTGCAGTAACCTGAGATGCTGTCTCATTTGACTCCGGTGTAAGGTGCAGAGGTGGGGCAGCCGGTAAGGGAGGCACTGACCTAAGGTCACACAGCAGGCAGAGCAGACCCTCTCATCTCCTGCACCCACTATACTATCCATAAAGGTGTTTATCTGCGGTGCTTTGGAGATAGGAGGGTGGCCCAAAAACCCTGGCCGCCTGGGCCCTCAGCCTAGTACTGAACTGAGGTAGATGACAAGATTTATGTTTGGAGAAGACGGGTCACTGGCTCAACTGAAACTAGCTAATACCTGTGACCCAGGACAGCATGCCAGGGTAGGGACAGGCCTCAGGCTGGAATGCACTGACTCTCTTGACCCTCCTTTGGTCACACAG
Seq C2 exon
GCAAAGGCCTCGTCCTGCCCTCTGTACTGGGCATCACCTTTGGTGCCTTCCTCATTGGGGCCCTGCTCACAGCTGCACTCTGGTACATCTATTCTCACACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050190:ENSRNOT00000071801:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.358
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(2.4=26.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]