BtaINT0010569 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101497440-101502121:-
Coord C1 exon
chr5:101502053-101502121
Coord A exon
chr5:101497543-101502052
Coord C2 exon
chr5:101497440-101497542
Length
4510 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
GATGTTTGTCTGTCTTATAGCTC
3' ss Score
9.12
Exon sequences
Seq C1 exon
CTTCTCCAGCAACCACTGGTGAAGAAGGTTGAATCTGAAATTGACACACTCAACATCTACTTGGAAGAG
Seq A exon
GTATGGGGTCAGGAACTGATTGCTGTGTGTCTTTTCACTCCCCTTCTAATGTACATGTACTAGTGTCACACACATGAGTTTGAGCAACCTGAGAGGGTAAGTGTTCACAACCACTTTGGAGTAAGCCTTGTGTAGTTTCTTTTGGAACAACTCTGGTGAGTGAACAACTTTGGGGCTTCCCTTGTGGCTCAGATGGTAAAGAGTCTGCCTGCAATGCAGGAGAACTGAGTTTGATCCCTGGATTGGGAAGATCCCTTGAAGAAGGGAATGGCAACCTACTCCAGTATTCCCGCCTGAAGAATTCCATGGACAGAGGAGCCTGGGATCACAAAGAGTTGGACATGATTGAGAAACTAACATACACACACACTGGTTAGTGTATCAGGAACAACCCTGAAATCATGATGCTGTAGTTTAAATGATGTTTTCATACACACCTTCCCCGAGTCTCACATACCACCCCTCCTTCTATATAAGGAGACTGAGGCTGAAGTGATCGAGTAGGTGTGCTTCTCAACTCAACCTTTTTGTCAGGAGTCAAGGTGGGAGTTGAGCCTGGGGATACTAATTTCCACAACACCATTCCTAAGACTGCAGTGGCCAGATGGTCTGTGTACCAAGCCAGATTTGTCAGTCAGCTTCTAACTCGAGACATCAAGTCTAATGGTCTAAAAGCCAATCATGATTATATCTGTGACTATTTCCTTTTTTCTGTGTATCTTTTCCCCTTTTCTCTTTACCAATATCATCAGAGGGCAATCTTATTCACGTTTAACAAAAGTTACTTTTGGCTTTCTTTCTCTTCTCTGTTGTTCTTTGTTATTTGATTATTTGCTTTTGGTGCTCTGTTTAATTAATTTCTTCCTTTTTAAAAATTATTATTATTTTTGGGCCCAAGACTTGAGGGATTTTAGTTCCTGGACCAGGGATTGAACCTGGGTCCATGTAGTGAAAGCACTGTGTTGTAATCACCAGACCACCAGGGAACTCCTTCTTTGTTTTGGGCTGAAGACAGGAGAAAAGGATATTTTCTGTCATTCCTTTTCTAACTTCTTAAGTTGAATGCTAAACTTGTTTATTTTTAATCTCTCATTTTCTGATTAATTTAAACTATAAATTTCCCTCTAAGTATATTCTTTATCCAACAATTTTTGACATGTATTGTTTTCTTTAATGACTTACTTTATATTTTAATTTTTTGAAAATTCATGGGATATTTAAAGCCACTTTTTTGTTACTAATTTCTAAGTTGCACTATGGTCTGAGATCATGATAGTGAGCTTCTAAAATGCATTGGGTTGTTTTTTTTTTTTGTTATCTAATATGTGGTCTGTTTTTGGAAATGTTCATTGTGTGCTACAAAAGAATATCCAGGTCCTTTCTCTTGGGTCGGGAAGACCCTCTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTGCTTGGAAAATTCCATGGGTGGAGGAGCCTGGTAGGCTGCGGTCCTTGGGGTCGCAAAGAGTCGGACATGACTGAGTGACATCACTTTCTCTTTTTCTTTCTCTTCTCTTGGGCATGGATTTATCTAGATCTAAAAGTCCAAAATGATTATTTCTGTTGTTCATGCCTTTGTTATCCCTGCTTATTTTTTCTGCTCCATCTATCAGTTTTTGGAAATTTGTCAAAATTTGTAATTACAGTGGTTGATTGGTCCTTTATCCATTTAGCTATGCTATTCTGTCAGTCATTTCTTGATATATTTTTTGATTATATAATTAAGGTTGTATGTTTTATGAACATATCTTTTTAAATTTCCTTTTTATTAGTATATACTGTCCTTCATTTACATTATATATATCTATATATATTTCTTTGCCTTAGATTTCTACACACATGTGCACTTTTTTTCCTTTGCCTTAGATTCTGTCTGATCAGATATTAAGTCTGCTATCCCAGCTTTCTTTTGGTGTATATTAGTCATTTGCTTTAAATCTTTATGATAACTAAATGATTGATGAGAGCAGTGGTTCCAAAGATGTTTTTTCAGGACCCCTCTATACTCTTAAATGATCTCAAAGAGCTGATGATAGTGTGGGTTACATCTGTTTATCTTATTAGAAAAGATAATGTCTTATCTTATTAGAAACTAAAAATGATAAAAACATTAAAATATTTATTAGGCTATTTAAAAACAATAGTAATAAGCTCACAACATTTTAATATAACATTTCATGAAAAATGTATTTCCCAAAACAACAAAAAAATTAGTGAGACTAGCAGATTGTTTTACATTTTTGCTTTAATATCTAGCTTAATCAGAGAGAGTGAAATTCTCCGGTCTGCTTTGGCATTCAATCTGTCGAAATATCACACATCAAGTAGTCCCCTTCCACTAGTACAGTGAAAGAGAATGAGAATGGAAAAAAGTGAATACTGTCTTAGTATTAGCCCTGGGATTTCTTTGGAAGGAATGATACTAAAGCTGAAACTCCAGTACTTTGGCCACCTGATGTGAAGAGTTGACTCATCGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACAACAGAGGATGAGATGGCTGGATGAGAGAGTGACTCGATGGACGTGAGTCTCAGTGAACTCCGGAAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCAATTCATGGGATCGAAAAGAGTCGGACACGACTGAGTGACTGAACTGAACTGATTATTCCCAAAATAATTCTGCTTTCACAAATTGCCAGATAGTCTTGGGCATTCCTGAGAATTCCCAGACCATGTTTTTAGAAGCCCTGTACCCACTCCAAGAGAAGGCAATGGCAACCCACTCCAATAGTCTTGCCTGGAAGATCCCATGGATGGAGGAGACCGTTAGGTTACAGTCCATGGGGTCGCGCAGAGTCAGACACAACTGAGTGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGGAGGAAATGGCAACCCACTCCAGTATTCTTGCTTGGAGAATCCCAGGGACAGAGGAGCCTGGTGGGCTGCCGTCTATGGAGTTGCACAGAGTTGGACACAACTGAAGCGACTTAGCAGCAGCAGCAGTACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCAGTCTACAGTCCATGAGGTCTTGAAGAGTCAGACAGAACTGAATGAATAAGGACACAGAACATACCTAAAAAAATCTCTTTCAAAATTTCTTCCACTTCAGCATTTATAACTTCACGTCTAAATTTATAACATAAATCTTATTTTTTCTATTAGAGTAATTTATGCAATTGTCTTGAACTCTCCATTCATTTATTTAACAAACAGTTTTTGAGTGATCAACATATACCAGATACTCTTCAACATGATAGAGATGTGGCAATAAAAGTCATAGACATGACTCCTGTCCTCATGGAGCTGATATTCTAATGGAGAGACAAATAATATGCAAATTAAAAAATACATATATATGCACAAACATACATATTTAGGAATAGTTTTAATAGTCATTAGTGCTATGTAGGAGTGTGGTGGGGCTAAGCCAGGATATGACTTTTATTTTATTTTATATATTTGCCTGCACTGGGTCTTAGTTGTGGCACTCAGGATCTTTGAACTTCATTGTGGCATGCAGGATCTTTAGTTTCGGCATGTGAGCTCTTAGTTGCGGCATGTGGGATCTACTTCCCTGACCAGGGATCAAACCCAGGCCCCATGCATTGGGAGCTCAGAGTCTTAGCCACTGGACCACCAGAGAAGTCCAGTGTGACTGTTTTAAAGTCAGGTGGCCAAGAAAGGCCTCTGTGAGGAGATGTCATTGGATCAGAGAGCTGAATGAAGAGAGAAAACCAATCGTGTATATAAAGCTGTTTAAGGATAATGGAAGCTTCTGTTCCTTTGGCCACTGCACTTAATTTAGTAGAGGAGCTGTAGCTTAGACCAGACCAAGAGTGGACCCATTTTACAGAAGGACCAGGAAACTGTAAGATGCTGAGAAGAAAGCCAGAAAGACAGCAGGAGGCAGTTTTGGGAGTGGCAAGAAGCAGAAGTAGAAGGGTTTCAGGAAATCTGTGTGAAGACAGCAAGAGTCTTTCTTTTTTTTTTTCCATTTTTTAATTTATTTTAATTGGAGGCTAATTACAATATTGTGGTGGTTTTTGCCATACATTCACATGAATCAGCCATGGGTGTACATGTGTTCCCCATCCTGAACCCCCCTCCCACCTCCCTCCCCATCCCATCTCTCAGCATCATCCCAGTGCACCAGCCGTGAGCACCCTGTCTCATGCATTGAACCTGGACTGGGGATCTATTTCACATATGATAATATACATGTTTCAATGCTATTCTCTGAAATCATCCCACCCTCGCCTTCTCCCACAGAGTCTAAAAGTCTGTTCTTTACATCTGTGCCTTTTTCAGCAAGAGTTTTTCAGTCTCCACATTGCAGAGATGTTATTTTCACTTTTGTTTTAATGGGATGTTTGTCTGTCTTATAG
Seq C2 exon
CTCGGGAAGGAAACTCAGACCTATACCTTCACCATCAGCCAAAGTGTGTTGGTCACCAACCTCAAACCAGCAACCATCAAAGTCTATGACTACTACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097:ENSBTAT00000037825:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(25.0=100)
A:
NA
C2:
PF076779=A2M_recep=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]