GgaINT0142539 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1601053-1601325:+
Coord C1 exon
chr27:1601053-1601121
Coord A exon
chr27:1601122-1601222
Coord C2 exon
chr27:1601223-1601325
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCGGCACCTCATCCCCCAGCTG
3' ss Score
5.91
Exon sequences
Seq C1 exon
CTGAAGAGGCAGAAACTGGTGAAGAAGGTGGAGGTGCAGAGCGACCAGGTGACCATTTACCTGGACCAG
Seq A exon
GTGAGATGGGTGACAATAGCAGGAGCGGTGCTGCGAGCACAGGGATGACAACGGGGTGTTGGGACGTGGCTGTGCCTCACCTTCGGCACCTCATCCCCCAG
Seq C2 exon
CTGACAAAGGAGGAGGAGACCTTCAGCTTTGCAGCCACGCAGGACTTCCCAGTGAAGAACCTCCAGCCTGCTACCGTGACGCTGTACGACTACTACGAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(25.0=100)
A:
NA
C2:
PF076779=A2M_recep=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGGCAGAAACTGGTGA
R:
CGTCTCGTAGTAGTCGTACAGC
Band lengths:
170-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]