DreINT0000088 @ danRer10
Intron Retention
Gene
ENSDARG00000041685 | A2ML1 (3 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21285260-21285530:-
Coord C1 exon
chr15:21285447-21285530
Coord A exon
chr15:21285366-21285446
Coord C2 exon
chr15:21285260-21285365
Length
81 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
3' ss Seq
ATCTTTTTATCCTCTTGAAGGTT
3' ss Score
9.29
Exon sequences
Seq C1 exon
CTTAAAACTCAACAGCAGTCATATGCCTCGCCTGTGGAGCGGATTGATTCCAAAGATGATCATGTCCTTGTGTATCTGAAAGAG
Seq A exon
GTGAAAGATTTTATTTTTAACAGTTATATTTTTATTCATAATGATTCATATAAATTTATAAATCTTTTTATCCTCTTGAAG
Seq C2 exon
GTTCCTAAAGCAGACCCAGTGAATCTCCAGATTGGACTGAATCAGATTATTCAAGTGAAGAATCTTAAACCAGCTGTTATTAAAGTGTATGATTACTACCAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041685:ENSDART00000155787:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(29.7=100)
A:
NA
C2:
PF076779=A2M_recep=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTCAACAGCAGTCATATGC
R:
TCATACACTTTAATAACAGCTGGTTT
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]