BtaINT0010841 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61973409-61974063:+
Coord C1 exon
chr19:61973409-61973525
Coord A exon
chr19:61973526-61973887
Coord C2 exon
chr19:61973888-61974063
Length
362 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTACATTTTTTTATCCATAGGAT
3' ss Score
11.1
Exon sequences
Seq C1 exon
AAACAGGCATATGTCTTGACGTCTATGAAGGCCAGCTCACGGCGATTCTTGGCCACAGCGGAGCTGGCAAATCCTCGCTGCTGAGCATCCTTGGCGGCTGGTCTGCTTGCACTGAAG
Seq A exon
GTGAGAAGAGAATTTTACAAACCAAGGTGGCTGCTGAACAGCTTCCTCAGTCTGGTTATGTGAAAGAAAAACGTTTCTCAGAAAGAGGCTTTTTGCAAAGTTGAGCCATTTAAAATGGGAAATATTTATTTTGTGTTTACATAAACTAAAATGCTTGTATCTCTTTTTCACTATTATTTGTCATTCCGTGTATATTTTGCATTGCTTTGGACAGTGGTATTTATGTCAAGAATAATCTGCATCTTTTCAATGTATTAATTACATAGCTATAAAATGGGAGTTTCTTCAGTGAATATCCTATATTATCACTCTGCATAGAGTTAATATCCTGGTGTTAAAGACTTACATTTTTTTATCCATAG
Seq C2 exon
GATCTGCCACTATTTACAACACCCAACTCTCTGAAATAATAAACATGGAAGAAATCAGAAATTACACTGGATTTTGTCCACAATTTAATATCTACTTCGATTTTCTTACTGTGAGAGAAAACCTCAGGCTATTTGCTAAAATAAAAGGGATTCCACCGAAAGAAGTGGAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(26.0=95.0)
A:
NA
C2:
PF0000522=ABC_tran=FE(39.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCATATGTCTTGACGTCT
R:
TCTTGTTCCACTTCTTTCGGTG
Band lengths:
290-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development