HsaINT0000415 @ hg38
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69193814-69194495:-
Coord C1 exon
chr17:69194385-69194495
Coord A exon
chr17:69193990-69194384
Coord C2 exon
chr17:69193814-69193989
Length
395 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTTTAAATTTCTATTTATAGGAT
3' ss Score
9.91
Exon sequences
Seq C1 exon
GCATATTTTTTGACATATATGAAGGACAGATCACTGCAATACTTGGGCATAATGGAGCTGGTAAATCAACACTGCTAAACATTCTTAGTGGATTGTCTGTTTCTACAGAAG
Seq A exon
GTGAGAAAACAGTTTTATAAAGTAAGTTGGCTGAAAAAGCAAGTTGTAAATTGGTTTGATTATGTAAAAAATGTTTCTCTAAATTGGACTTGTTACACAGTTGAATAATTTAGAGCAGGAAATATTGATTTCATATGCACATAAATTCATGAAAACATTTGTATCTCTATTCCACTATTATTTGACATTCCATGTATATTTTGCATTGCTGTGGACACAGATATTTACGTTAACAGTAATCTGAATTATTCAATGTATTAATTATGCAATTGGAAAATGTGAAGTTTCTTTAATAAAAACAAGTTTTTTGAACAAAATCTAAATACTAACATATATTATCACTCTGCATAGAATTAACATTCTGGCAGTAAAGCCTTTTAAATTTCTATTTATAG
Seq C2 exon
GATCAGCCACTATTTATAATACTCAACTCTCTGAAATAACTGACATGGAAGAAATTAGAAAGAATATTGGATTTTGTCCACAGTTCAATTTTCAATTTGACTTCCTCACTGTGAGAGAAAACCTCAGGGTATTTGCTAAAATAAAAGGGATTCAGCCAAAGGAAGTGGAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263:ENST00000269081:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(39.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACATATATGAAGGACAGATCACT
R:
CTCTTGTTCCACTTCCTTTGGCT
Band lengths:
278-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development