GgaINT1002760 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8219988-8220565:-
Coord C1 exon
chr18:8220455-8220565
Coord A exon
chr18:8220164-8220454
Coord C2 exon
chr18:8219988-8220163
Length
291 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TCATTTATTCTTGTGTGCAGGTT
3' ss Score
9.13
Exon sequences
Seq C1 exon
GTTTGTCCTTCAACATTTATGAAGGTCAGATCACTGCATTACTTGGTCTCAGCGGGTCTGGAAAAACTGCCCTCTTGAATGTGCTCAGTGGATTTTCCAAGCCTTCAGCAG
Seq A exon
GTAATGAGTGGAGAAGAGGAGAAGCTCTCTGCTTTTCAAGCGTAAAGATGCAAAAGACTAATTTTTCTTCAGTTCTCCAACCTGTCTCATTGTAAGCACAGATTGCTCCTTCAACATGAGCCTCGTGGATTTGCTGTTGTGTGCAAGCATGTGTGGATGGTTATTTCTCCCTCTGGATGCCCTGATGTTTTCCATGAGCTGTATATCTTTGGGAAATAAATTTTATTTTGTGAGCTATACATTTCTGTGTATACTACATATGATGTTTGTTTCATTTATTCTTGTGTGCAG
Seq C2 exon
GTTCTGCAGTGATTTACAACTACAAGGTATCTGAAGTACAGGATATGGAAGGAATTCAGGCAATGGTTGGGATTTGCCCACAGCTCAATTTACATTTTGAAGCCTTGACGGTGAAGGAAAACTTGAGAATTTTTGCTCACGTGAAGGGGATTCAGTGGAAAGAAGTAGAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTTCAACATTTATGAAGGTCA
R:
CTCTTGCTCTACTTCTTTCCACTGA
Band lengths:
284-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]