BtaINT0010850 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61983139-61985337:+
Coord C1 exon
chr19:61983139-61983272
Coord A exon
chr19:61983273-61985199
Coord C2 exon
chr19:61985200-61985337
Length
1927 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
CCTTTTTTTTTTTTTTAAAGGAT
3' ss Score
10.62
Exon sequences
Seq C1 exon
GATCCAGTATTGAAGATGCTGTGCAGTCCCTGAAGCATCAGAATCTAGTTCTGGAGGTAGATGATGCTAGAAATAGAAACGGCTCAGACGACCCTTCCTACAACGGAGCCATCATCGTGTCTGGTGGCCACAGG
Seq A exon
GTACGTTTGCCTCCATGGACTTTTTTAAAAAGATTGTCAAACCAAATTTTATTTTTAAATAGATTTTAAGTGGGAAGGAAAAAAGATCTGCTTCTGTTTACCACTAAGTACCTTTGTCTAAAAGACATACACATTCAACAATTCAAATTATAATTCCAAGGGAAAGAATATATCTGAATCTTTTTTTTTTTTTTTTGCCTCCATGGACTTTTATCATGCATGGCTTTTTGCCACATCCAAATACTTGTAAATCATAGAAAAGCAGCTCAATTATTCTATAATCAATACAACTTGAACACGGCTTTGCTGCTTTTAGAAGAAGGTATGAAATTTTAATCCTCTACAGGGCACAGTTTCCACCTTCTTTACTTCTTAATAGGATCATTTTTAATTAATAAATTTTATTATTATTATTAATAAAGTTGTTTAAAATTACTTTATTCATTATAAAAGCAAAGTGTCTTTTGAGGACACTATGGATGAGCCTGGAGGGCATTATGGTAGGTGAAATAAACCAAACAGAAAAAGACAAATGCTGCATATGGTACGACCTAGAAGTGGAATCTTAAAAAAAAAAAAAAGACCGTCAAGCTCATAGAACAGAGAGTAGAAAGTGGCGGCTAGGGGCAGGTGGGGGAGTAGGACGGCGTTGGTAAAAGGGCAGAGGCTTTTAGCTATAGGATAAATAAGATCTGAGCTTTAATGTGAGTTTGTGACTGTAGCTGGTAACAGTGTATGGTGTGATTAAAATTTGCTAAGGGAAGAATTTAAATGTTTTATACAAGTATGAGATACTTTCCTGGTGGCTCAGACGGTAAAGCGTCTGCCTACAATGCGGGAGACCCGAATTCAATCCCTGGGTCGGGAAGATCTCCTGGAGAAGGGAATGGCAACCCACTCCAGTATTCTTGCCCTCCCAACAAAAAGAAATACACACACACACACACACACACACACATATACATGTGCGGTATGGATGTGTTAGTTAACTTGATGGGAGGAATCCTTTCACAGTTATATGGGTATCAAGTTGCCATGATGTACACATTATTTATTTATCGGCAGAACTGCGTGGCTTAAGGGATCTTAGTTCCCCGACTAGGGATTGAACCCGGGCCACAGCGAGGAGAGCACCAAGTTTTAACCACTAGACCACCAGGGAATTCTCACTGCGATGCACACTTCAAGTGTTTTAAATAACTTCAGTTTTATTTGCCAATTATACCTCAATAAGGCTTCCTTGATAGCTCAGCTGGTAAAGAATCTGCCTGCCATGCGGGAGACCTGGGTTCGATTCCTGAGTTGGGAAGATCCCCTGGAGAAGGGAATGGCCACCCTCTCTCAGGCCTGGAGAATTCCATGGACCGTATAGTCCCTGGGGTCACAAAGAGTCGGACACAAGTGAGCGACGTTCACTATACCTCCATAAGGCAGAAAAAAGCAATACTGTTTAATAGATTAATTCAAACGTTACTGGAGTATGTCGCATAGAAGGTAAAATGCTCTTCACAATTCCATTCGTTTTTCTGTATTATATTCATATTAATGCATTTAGTAATTATCTTCTACACTTTTTCCTTTATAAAAACACAACTCACTATATCTAGAATGATCTCATGTTCAGAAACATATTTTCTAAATTGAAATCGTATTAGACAAGTCCTACGACTTTCCTTGTCACATAGAATCTAGATCTTTGACATCTTTCCATGTTCGTGAATGTCCATTTATTTCACGTATAGAATAAGTCACTTGAATTACAAAAATAAGGCAGTCTTGTACCAATTCCAGTAGGGAGAAGTGTCAAGGAAAAGCTAATTGTCTCCCTATCCTAATTCCACCCCGACAGTTTACAGACTCTGCAATAAGGAGATTTACTCTAAGAATTTAGAGCGTATATTTGCGTTCCTTTTTTTTTTTTTTAAAG
Seq C2 exon
GATTACAGATTTTCAGTTGCATGCAATACCAAGAGGATGAACTGTTTTCCTGTTCTCATTGGGATTGTTAGCAATGCCCTGCTTGGAATCTTTAATGTCACAGAGCTTATTAAGACGGAGAGAAGCACGTTTCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.9=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTATTGAAGATGCTGTGCA
R:
GGGTGGAAACGTGCTTCTCTC
Band lengths:
270-2197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development