BtaINT0010874 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61970271-61972369:+
Coord C1 exon
chr19:61970271-61970439
Coord A exon
chr19:61970440-61972310
Coord C2 exon
chr19:61972311-61972369
Length
1871 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACT
5' ss Score
6.64
3' ss Seq
AGTCTTCAATCTTCTTTCAGAAT
3' ss Score
9.2
Exon sequences
Seq C1 exon
ATGAAAGTGGCCAGCGGCATTCACCACTGTTTTTCCTGAAGTCTTCCTTTTGGTCCCAACACAAAAACACTCACCATGAAGTCTTTGGGAATGAAATGAATTCTGAGCTCTCCTGCGATGATTCTTTCGAGCCAGTGTCTCCAGAGTTCCACAGAAAAGAAGCCATAAG
Seq A exon
GTGACTTAACAGTTTATGTGACTTTGTACACATTTAGGTAAAAGTGTGATAAATTAACTTGCCACAAGGACGACCACAGGTCCACTGTTGTGGATGATGTGGTTTTTAAAGATTTATTTATTTGTAATTGCAGGATAACTGCTTTACAATGGTGTGTTGGTCTCTGCCATACATCAGTGTGAATCAGCCACAGGCACACACGTCCCCCACTCCTGAACCTCCCTCCCACCTTGCACCCCATCCCACCCTTCTAGGGTGTCACAGACCAGCAGGTTGAGCTCCAAGTCATGCAGCAAATCCCCGCTGGCTATCCATCTGTTCTACATAGGATCCTGTGTGTGGTCAGAGCCACTCTCTCCATCTGCCCCACCCCTTCCTTCCCCCAGTGGGGCCACAAGTCTGTTCTCTGCATCTGTGTCTCTGTTGCTGTCCTGAAGATGGGCTCATCAGTGCCATCCTTCTAGATTCCACATATATGCGTTAACATGCAATATTTGTCTTCCTCTTTCTAACTTACTTCACTTTGTATAATAGGCTCTAGATTCGTGTACCTCGTTAGAGCTGCCTCAAATGCATTCCTTACAGCTGAGTGATATTCCATTGTATGTATGTACCACCGCTTCTTTATCCGTTCGGGATGATGTGCTTTCATTCTTTTTAAAATTTTTTTTAATTAGAGTATAATTAGTTTATCATATTGTGATGGGTTTTGCCATACATCAACATGAATCTGCATTAGTCGATGATGTGTTTTTGGAAGTTCCTTTCTTTCAGATATTTTTGCTTTCATCCTGAAAGACTTCTTCTTAATTAGTGGCTCCATGACTTTCTGGTAAACTCTGAGCTCTCCAAGCCTCATTTCTTCCCAAGAAATGTGTGATGTAATTCCATAGTACAGTGGCTTCTTCTTGAGTCAGTGAGATAATTAAGCAATATGTCTGTTACATAAAAGGAAGTGTGTACATGTCAATTTATTATCCATGCGGGTTTGGTATCCATGTACAGATATATAATAGAAGGCTGAGTTCATAAATCTGAAGCTTTGAAGAAAGATCTAAAGACACAGACTTGAGAATGAGAATTTTTGGTAAGAGAGGAAGCAGGAAGAGGGGCTGATACTGTATGGCAACGATCTGAGAATAAGAAAAATAGCTGGTCGGTATAGAGTCCAATTTAAGGAGTCCATAAGGTATGCCCAGAAGGAATATTGAGATCGAGGTGGAAACCAGAAGTGAACAGAGCTAAGGACAAGAAGACAAGGGTTTGCAATTGTCAAGTCAGTGATGAGGTTTATGAAACAAGGGCTGAAAAGTGACCGCTGAATGCGCTACTTAGGACCTCATGGGTAACTTCATTGAGAATGGCTTCAGAAGCGTGGTGGAGTCCCAGGCTCTGTGTCTTATGCTGGGAATGAAGGTGGGGAAAACAAATGAAACACAGGGCAGAAGCCACTATTATTTTGATAAATTTGCCCGAGGAAGAGAAGAACCATTGAATAATCAAGAGAGAGGAAGCCTCTCTCCACTGCTCCCCCTCCTTGGCTTCTTCCTGGCTTTCTTCCAACAGTAGCTCCCCTTCATTTGCTAACGCAGCTGGAAGGCATGAAATGCCCGTGGAAATCTCCTTTGGGCCGGGCAGGGGCTTTTGCCCTCCTCTTCCCGTTAAGATGGATCCTCTTACCAGTTTGTGGGAAGCGGGTCCCACCTCCACCCCCTCGCTCAACCGGTGTCTCCCCGTGCTCCTGAGAACTCCGACAATAAATCCCTCCTGTGGGGAAGGTTACGGTCAATCATGAGCGGTAGTGTTAGCCGGTGGCGTCATCTGCGTCATCAGAAACTGTAATCACCTCATAGTCTTCAATCTTCTTTCAG
Seq C2 exon
AATCAGAAATCTTAGAAAAGAATATAAAGGAAAACCTGAAAAAGTAGAAGCATTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGCATTCACCACTGTTTT
R:
TGCAATGCTTCTACTTTTTCAGGT
Band lengths:
214-2085
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development