HsaINT0000413 @ hg38
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69197064-69201668:-
Coord C1 exon
chr17:69201500-69201668
Coord A exon
chr17:69197123-69201499
Coord C2 exon
chr17:69197064-69197122
Length
4377 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
ATTACTTCATCTTCTTTCAGAAT
3' ss Score
9.47
Exon sequences
Seq C1 exon
ATAAAGATGGCCATGGGGATTCTCCATTATTTTTCCTTAAGTCCTCATTTTGGTCCAAACATCAAAATACTCATCATGAAATCTTTGAGAATGAAATAAATCCTGAGCATTCCTCTGATGATTCTTTTGAACCGGTGTCTCCAGAATTCCATGGAAAAGAAGCCATAAG
Seq A exon
GTAACTAAGAAATTACATGACTATGTACACTTATAGGTAAAAGCTTAGTAAATGAAGCTGCAGGTCAAATGTTGATATAGATTATGTGTTCTTTTCTTTTTATTATTTCTCTGCCATCATCCTAAATTCCTCTCATTCACCATTTTCAAAGTGAATACTGTTGATACTATCAACAGTAAAATTTAAGAGACCTATCATTTTCTTGCCTCTCATCTTCTGTCTTCCATATTATCATCTCCCACTACTTATACTCCCTCTCTGCTTTGTCTTCTAACACACACATGGCTATGTTATGTATATGTATACATATGCAGTATATAAGTATATATTATACACGTTTTTCAAACTTAGACTATCTTCCCATAGGGAGTATAGGGACTGAAATTTTGAAGTCAAAAGGTCTCTTCACAATTTAATAGCTTTGTGACTTTCAGTTAAACTATATGATCTAGCTAAGCAGCTTTTTCATTCATTTCTAAGAATATATGGCCAGGTGCAGGGGCTCACACCTGTAATCCCAGTACTTTTGTAGGCTCAGATGGGCAGATCACTTGAGCTCAGGAGTTTGAGACCAGCCTGAGCAACATGGTGAAACCCTGTCTTTACAAAAAATACAAAAATTAGCCAGGCATGGTGGTGCATGCCTGTAGTCCCAGCTACTGGGGAGGCTGACGTGGGAGGATGGCTTGAGCCCAAGAGGTGGAGTTTGCAGTGAGCCAGTATGGCGCCACTTGCACTCCAGCCTGGGCGACAGACCCAGACCCTGTCTCAGAAGTAAATAAATAAATAGAATAGAATGCCTCTCTTTCATCTTTAATAATATAAATAATCCATAAGATAATTAAGCATATATGCCTGTTACATAATAGAAACTGCATAAATGTTAGTTGTATATTCAAACTGGTTTGATTGACTGAAAGTAAACAAATAAGAAATAAAGCAGGGAGAGCCATCAGTAAAACATTCCTCTATAATTTAGTGCATACTTCCCTAGGTATTTACTTATTTTATTCAAGATTTTTGGGCAGTATTCTTAAGTGACATTCTATTTGTGTGAAGTTATCTTTTTAAAAGTATATTTTCAGGAGACAGTAGATCATAGTGATTATGATGTAGTCTGTAGGTTTAAACCAACTGGTTTGAATCCTGGCTTTGCCCCTTATTAATTTCAGCTAAAGTATTAACCTCCTATGCCTCAGTTTCTTCATCTTAAAAATGAGCATAACAATAATACACAATTTGTCATAAAGAGTCAATGAGCTATCACATGTAAAGCTTTTACATGGCCTATTGCTAGGTGTTCAATAAATATTAGCTGTTAGGAATATCCCAAATATACTAAATCAGTTAGACCTATCTCAGTTCACGTTATTTTGAAACAGATACGTAAAAGGTGATTGGTGAAATTATCTGGGAGCAGTGGGAAATGAGGAAGGAGACAACAGGAAAAGGAGAATACTATAACCTAATATGAAAAGATCAAGGTGAAAGTTCTCTATTCCCTGGAGTTGAGGAAATTTCTCAAATTCTATAATTTTTAGTAGTCTTTCAAGTCCTATCTCCTGCATGAAAACTTTTATAGCTATTCTGTAGCTATAGTTTATCACTTTCTTTGGTATTAATTCTTATAGAAATTACGTTGACAACAGAAAATTTAGTATTGTTGCACATAACAAATTAAATTAGGACTAAATTATATTATTTCCTCTTTTGTCAGGCCGAAAGCTCGTCTTTTAGGACATGGTTCAATAAATGCCCAGGATCATGAGTTTGATCCATATTAATCCAGTGAACAATGGAGATGGGTGTTGTTGTATGGTATGAAGAGCGGTTATTTAGGTCTCCTAAGTGGTTGATGCTAGTCATCCTATTCAGTGGTCTTGGGTCTAATTTGCCCTTATGACATTAATATGAATTGAGTGTACTCTCAGATAATTGTGACAGTTCTAGCCTGTCTAAACCTGCATACAGTGTCATCCACCTTGATATTCCCTCTATATGTACCTAGAGATAGAGGGAACATCCTATAGGAAGTGGCCTAACATGCCTGAAACCAGGAACTCTTTGATCATTCTGGACCAGACTGTTCCTATTGACAAATTAATTACTTTTTTAACTTATTCATCATTAATCAGTCCCTCTGCTAGAATTAGGATACAGAGATTAATGATAGTCTTTAACCTCAGGAAGTACAGAGTCTAAGGAAATAGATACTAAAATAGATAACTGATAAGTAGTAGAGCTGAACACAGAGAATTAAAAGAAATAAAGAAGGATCATCCAACCTAGTGTAGTGTAGTGGGGAAAGTCAAAAGGAGGTGACTCTTAAGGTGAGTCTTATGAAAGAGAAAGGTCTTGGTCATATAAAGTATGGTGGGGTATGTGAAGGTCCTTCCACACAGGGGATATGGCATAAGCCACCTAGTAGAGCAAGACACAGTGTGTATGTATAGGGAACACAAGGAACTAACATTTCTGACCTTAAAGTACAAGAAAAGAGAGAGGTTAACTTTAAGAGGTAGGCACCAAATCTGATCATGGAAGATTTTGCTTGCCAAGGTAAGGAGATTAGGCTATCCTGTATAGTGTGGGGAATCACTGAATGATTTTAAGGAGGCAAATTAGGTAACCAGAACTTTGATAGATCACTTTGGCAGCTTTATGAAGAATGGATTTGAGGGTGACACAACTGGAGAAATGGAAATATTTACGATATTTTACCAGTCTAGGTCTGGTCAGGAAAAGTGAGTTGCTGGAAATATTGTGGGAGTAAAGGAGTTTAATACAGGGATTAGGGATTCACAAATGTACAAGAGTTAGAGGAGAGAAGGTTAAGTTACAACCAGAAAGTCAGGAAATAGCCACTGAGGACCTTAGCCTGATGCACAGAAATGGGTGTTTTTCAAGAAGTTTGTCAGTATACTGCTGCAAATGTCAGGGATTTTCTGGGAAATCTCTCACCAGTTATCTCAATCTGCAGTAGCAAAGCAGTCCTTGTCAAGAAGTCTGAGAAGCTGCTGCAAACCTCGAGCCTGCGTATATGCTTGGCTCACGTGACCCGAGAATAATGACCTTGCTTCATTTCTGCTCTCCAAATCTTGCCCAAGTTCTTCTCATTAGCAAAATCTGATACTGAAAAGAGGGTTCCGTGAAATGTAGTCTCTGATATGTCCTCCGCATTGCAGAAGGAAAGAGACTGTTGCTGATAGACAAGGGACAATTAAAAATAAAGCACAGAGGTCATAGCCCTGGTTGAGGTGAAAGATGACAAGAGCCTGGGCAAGAAGGCACAAGAAAAGTAGTAAAGAGATAAATTCAAATAGATTTATAAAGTTAAATTCATAAATTCTTGAAGTTAAATTGTAATAATTTTGTAGGTCACAGGATGGGGTGAAAAAGGGAGAGAGAGAGAGTTAAGGATGCCTCTCAGGCTCTTAGCTTGAGTTCCTGGGTAGATAGTAGAAATTCTAACTGAGATAGAGAATGGAAGTGGGCCAGTTTAGAGGAAAATATAATGCGTTCAGTTTGATATCCAAGTGTAGATATATAGTAAAAAGCAGAATATCTGAAACTTTGAAGAAATCTCTAAAACACAAATTTGGGAATCATTAGAATTTAGGTAGGAGTTGAAGCCATGAGAGTGGGTAAGATTGTATGGCAAAGGTTTGAGAATAAGAAAAATAGTTGGCCAAGTATAAAATCCAATTTAAGGAGTCCATAAAGTACGCCAAAACGGAATAGTAAGAGGAAGATGTGGAACCAAAGTGTAGAAGCCAGGGAGTTAGAGACTTAAGAAAACAAAAGAGTGAGTAATAGTTTAAAACAGTGATGAAGTATATCAAATAAGGACTAAAAAGTGTTCATTAGATTTGGTAACTAGAATGGTCATTGGTGAATTTCATTGGGAATAGTTTTTTGTGGAGTAGTATAGTGAGAAGCTATGTTGTCTTAGGTTGGGAAATAAATGTGGGATAAAGCAATGGAAATAGGGAGTAAAGATTATTATTTTGACAAATTTGCCTGTGAAAGATAATGATTGAGAGGGATTCAGGATTGAGGGAAAGCCTCTCTCCCTTTTTTCTTTCGCTCCCTTCCTTCTTTCCTTCTTTTTTTTTTCAATTTTAGCTTTCCCTTATTTATTTGATAACTTAGAGAAATAGCTGGAATATATGAAATGCCAAGTTTGATAAGAGTATTAGCAGGTCTGTGTAAATCTCTTTTGGGAGTGGTCAGGGGAGGGCTTTTATTACTGCCCTCCTTACATCCCACTGAGAGTGATACCCTTTACTGTGAAGTTCAGGCTTAGTTATGAACTGTAATCTGTGTTATTAATACTAGAAAATGCATTTACATGAAAATTACTTCATCTTCTTTCAG
Seq C2 exon
AATCAGAAATGTTATAAAAGAATATAATGGAAAGACTGGAAAAGTAGAAGCATTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263:ENST00000269081:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development