BtaINT0011028 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047254 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr11:106212105-106212838:+
Coord C1 exon
chr11:106212105-106212472
Coord A exon
chr11:106212473-106212678
Coord C2 exon
chr11:106212679-106212838
Length
206 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
GTCTCGCCTGCTTGCCCCAGCAC
3' ss Score
4.55
Exon sequences
Seq C1 exon
CTGGGCCTGGATGCCCCCAGTGGCTCTGCCGCCCCACAGCAACCGCCACCCCCACCGCGGCTGCAGGCACTCCTGGAGGACCTGCTGGATGCCCAGAAGGTCCTGCGGGACGTGGACGTCCTCTCAGCCCTTGCCCTGCTGCTGCCTCAGGGCGCCTGCGCAGGCCGGGCTCCTGGGCCCGCAGCCAGTGGCCCTGGCGGGGCCGCCAACAGCACTGGGGCTGGGGCAGGCCCCGGCTCCAACAGCACAGCTGAGGAGGGGGCCCCGCCCGCTGCAGCCCCGGCCCCCTCGGACGCGCTGCAGGGCCAGTGCTCCGCGTTCGTGCAGCTCTGGGCCGGCCTGCAGCCCATCCTGTGTGGCAACAACCG
Seq A exon
GTAGGTGGGTGGCAGGGGGCGGGGTGAGGAAGCCGGGGGTTGCTGGGCCTGCCCCCAGGCCTGGCTCTGATGCCCCCTCCCTGGTCCTGGTCCATGGTCCCCTACTCCATGCCAATTGTTTGACACCTGCACCCACTCGGAAGCCCCGCGCCCACCCTTCCCTGCCGATGCCCCGTCCTACCTCGAGTCTCGCCTGCTTGCCCCAG
Seq C2 exon
CACCATCGAGCCTGAGGCGTTGCGAAGGGGCAACATGAGCTCCCTAGGCTTCACGAGCAAGGAGCAGCGGAACCTGGGCCTCCTCGTGCACCTCATGACCAGCAACCCCAAGATCCTGTACGCACCCGCGGGCTCCGAGGCAGACCGTGTCATTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047254:ENSBTAT00000065373:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGTCCTCTCAGCCCTT
R:
TGAAGCCTAGGGAGCTCATGT
Band lengths:
308-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development