GgaINT0125061 @ galGal4
Intron Retention
Gene
ENSGALG00000001226 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr17:440262-440947:-
Coord C1 exon
chr17:440616-440947
Coord A exon
chr17:440422-440615
Coord C2 exon
chr17:440262-440421
Length
194 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGA
5' ss Score
8.18
3' ss Seq
AGCCTGGGCTGTGTTCACAGGAC
3' ss Score
5.94
Exon sequences
Seq C1 exon
CTGCAGCTGGATGAGGTGAACAGCACAGCAGCCCAGCACCAGCTCCGCACCCTCCTGGAGGACCTCGTGGAGATGGAGAAGGTTCTCCGTGACATGGACATCCTCTCAGCGCTGGCCAGGCTGCTGCCCAGGGGGGCCTGTGCCACCAAGGCTCCACCGCCCACAGCCAACAGCACCGGCTGGGCCAGCACGAACGCCACTGCCAGCAATACCACGACGGAGGAGGAGGGTGCCGGGGGGGACCCAGCGGACGGTGACAATCCCCAGGGGCAGTTCTCAGCCTTTGTGCAGCTCTGGGCTGGGCTGCAGCCCATCCTCTGTGGCAACAACCG
Seq A exon
GTAGGAGGCCTGGGAGGAGAATGGGACCAAGGGACGGCCTAGGCCAGGTGCTCCTCACAGCGTGCAGGAGTTGGTGCTTCACCGTGTCCTTGTGCCATGGCTGGGGGAAGTTCTGGGGGAGCCCTGGGCAGGGACTGCCCTCAGTGAGGGGTGTGGGGCTGGTGTGGGGTTTGTAGCCTGGGCTGTGTTCACAG
Seq C2 exon
GACCATTGAACCCGAGGCGCTGAAGCAGGGCAACATGAGCTCTCTGGGCTTCACCAGCAAGGAGCAGCGAAACCTGGGCCTCCTTGTGCATCTTATGACCAGCAACCCCAAAATCCTGTACGCGCCTGTGGGTACTGAAGTGGACAAGGTCATCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226:ENSGALT00000040507:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACCACGACGGAGGAGGAG
R:
CAGGATTTTGGGGTTGCTGGT
Band lengths:
243-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]