HsaINT0000624 @ hg38
Intron Retention
Gene
ENSG00000107331 | ABCA2
Description
ATP binding cassette subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr9:137019426-137021061:-
Coord C1 exon
chr9:137020694-137021061
Coord A exon
chr9:137020496-137020693
Coord C2 exon
chr9:137019426-137020495
Length
198 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
CCCCCTGTCCCCTACCCCAGCAC
3' ss Score
7.87
Exon sequences
Seq C1 exon
CTGGGCCTGGATGCCCCCAACGGCTCGGACTCCTCGCCACAGGCGCCACCCCCACGGAGGCTGCAGGCGCTTCTGGGGGACCTGCTGGATGCCCAGAAGGTTCTGCAGGATGTGGATGTCCTGTCGGCCCTGGCCCTGCTACTGCCCCAGGGTGCCTGCACTGGCCGGACCCCCGGACCCCCAGCCAGTGGTGCGGGTGGGGCGGCCAATGGCACTGGGGCAGGGGCAGTCATGGGCCCCAACGCCACCGCTGAGGAGGGCGCACCCTCTGCTGCAGCACTGGCCACCCCGGACACGCTGCAGGGCCAGTGCTCAGCCTTCGTACAGCTCTGGGCCGGCCTGCAGCCCATCTTGTGTGGCAACAACCG
Seq A exon
GTAGGTGGGCGGCAGGGGAATGGGGGTGAGGAGGACAGCCAGGGGCAGGGCGTGAGCCCTGAATCTAGGCTCTGGCTCTGGAGGTCTCATTTGGCGCCCTGCCCTGTGCCCCGAAGTCCTGCCCCATCCCGATGCCCCTCCCACTCTCGCGGCCCTGCCCCCTAACGGCCTGGCCCGGCCCCCTGTCCCCTACCCCAG
Seq C2 exon
CACCATTGAACCCGAGGCGCTGCGGCGGGGCAACATGAGCTCCCTGGGCTTCACGAGCAAGGAGCAGCGGAACCTGGGCCTCCTCGTGCACCTCATGACCAGCAACCCCAAAATCCTGTACGCGCCTGCGGGCTCTGAGGTCGACCGCGTCATCCTCAAGGTGCACGGGTCTGGGACGCTCCATGTTTGACAGGCAGAGTGGGAGGGGGTCTCTGCAGGCCTGGGACCCCTGGGCAGAGGGTGTCGGCAGAATTGACACGGGAGGGGTACGGGGTGCAGCTTCGGATGGGACACAGGCTCTGCAGGTGGGGGACCAGGGGGTCGCTTTTCCTTTCGGGAGCTCCAGGGGCTGCTGTGGGAAGGCACTGGAGAGTCTGCTCTGGCAGGGTCCTCCGGCTGGGGGTGGCCGGTCCAGGGCAGTGCTGGTGGAGGAGGGGTGTGTCCAGAGACCTTCCAGAGTGTCTCGTGGGCGGGCAGCTGGGCAGTTTGGGTTCTGGGTGAGGGGTCCTGTCTGGAACAAGCAGAGGCCAGGGCTGGACATTGGCCTGGGAGGGGAGGGCCTGTGGACGAGGCCAATCCTGGGTGTAGAGGGGGTCCCTAGGATGAGGGTGGGACAGATGAGGGTGGAGCATTGGGTGCTTAAGGGACACATGGAGACAGGTCCAGCAAAGGAGCTGGTGGGCACAGCTGGGCAGTTGGGGGTCCGGAGGCCGTGCTGCCCTGGGAGTGGAGGGCAAAGCAGGTTTCACCTGAGCGCCGCAGAAAGGAGTGGAGAGCCCGGGCGTGGGACTCACGCTTGAAATCCCAGCACTTTGGGAAGCCATGGTGGGAGGATCGCTTGAGCTCAGGAGTTTGAGACAAGCCCGAGCAACATAGCGGAAGCCCGTCTCTACCAAAAATACAAAATTAGCCAGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACTTGGAGGGCTGAGGCGGGAGGATCCCTTGAGCCTGGGAGGTGGAGGCTGCAGTGAGCTGGGACTGCACCACTGCACTCCAGCGTGGGTGACTGAGACCCTGTCTCAGGAAAAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107331:ENST00000464876:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.521 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCTCAGCCTTCGTACAG
R:
CAAACATGGAGCGTCCCAGAC
Band lengths:
251-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development