RnoINT0010220 @ rn6
Intron Retention
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2655122-2656095:+
Coord C1 exon
chr3:2655122-2655489
Coord A exon
chr3:2655490-2655935
Coord C2 exon
chr3:2655936-2656095
Length
446 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
TTGTGCTTTGTCTCTGCCAGTAC
3' ss Score
8.03
Exon sequences
Seq C1 exon
CTGGGCTTCAATGTCCCCAACGGCTCAGATCCACAGCCGCAGGCACCGTCCCCACAGAGTCTGCAGGCACTCTTAGGGGACCTGCTGGATGTCCAGAAGGTTCTACAGGATGTGGATGTCCTATCAGCCCTTGCCCTGCTGCTGCCTCAAGGTGCCTGTGCTGGCCGGGCCCCCGCACCTCAAGCTGGCAGCCCGAGTGGCCCGGCCAACAGCACCGGGGTAGGGGCAAATACAGGTCCCAACACCACCGTTGAGGAGGGCACCCAGTCACCTGTCACCCCAGCCTCTCCGGACACTCTGCAAGGCCAGTGCTCAGCCTTTGTGCAGCTCTGGGCTGGCTTGCAGCCCATCTTGTGTGGCAACAACCG
Seq A exon
GTAGGTCAGCAACGAAGGGATCGAGGGAGGGGTAGAGTCATGGGGCATTGGGGACTTGAGACCATCACTTGGCCCTTTGCATAGACTCCATTCTGAAGGCCCCATGTGCTATCTGCCCTGACATTTTTTTTTTAAGATTTATTTATTATATATAAGTATACTGTTGCTCTCTTTACACACACCGGAAGAAGGCATCAGATCTTATTACAGATGGTTGTGAGCCACCATGTGGGTGCTGGGAATTGAACTCAGGACCTCTGGGAGAGCAGTGACTGCTCTTAACCACTGGGCCATCTCTCCAGCCCCCTGCCCTGACATTTAAGTCCACTCTATGCCTGACCTGACACCTTGCCTTAGCCTGATGTTATGTTTGTAAGCCATCCCCAGAGCCCCATCTCACTGCTCCTGACATCCCTGCCCTGTTCCTTGTGCTTTGTCTCTGCCAG
Seq C2 exon
TACCATTGAGCCTGAAGCACTCCGGAGGGGCAACATGAGCTCACTGGGCTTTACGAGCAAAGAACAACGGAACCTGGGCCTTCTTGTGCACCTCATGACCAGCAACCCCAAAATCCTGTATGCACCCGCAGGCTCTGAAGCTGACCATGTTATCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268:ENSRNOT00000020339:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCCTATCAGCCCTTGCC
R:
TCATGAGGTGCACAAGAAGGC
Band lengths:
352-798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]