BtaINT0011113 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61897695-61900598:+
Coord C1 exon
chr19:61897695-61897814
Coord A exon
chr19:61897815-61900396
Coord C2 exon
chr19:61900397-61900598
Length
2582 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CCTTCTGTTTCGGCACATAGATT
3' ss Score
6.89
Exon sequences
Seq C1 exon
GCTTATTTTCTGCTCTAGACAGTCATTCAGACTTAGGTGTTATTTCTTATGGTGTCTCCATGACGACTTTGGAAGATGTATTCTTAAAGCTAGAAGTTGAAGCGGAAACTGACCAAGCAG
Seq A exon
GTAAAAACAAATCTAACAGAGCATTTTAGGCAGTGAACCAGACAGGTAGTGATCCAGACAGTGATTGTGTAAGCATGCTGAATGTCTACTTGGGGAAAGAAAGGGTAGGAGTAAGCAGGTAAATAAGTAGCTCCGATGTTTACGGATAGTGGTAGGCGCTGTGAAGGAAAGTGGGGCGGTCTGGGGAAGCAGGTAACTTAGGTTGTATCTCAGGGGAACATGAGGAGACGATACTTAAAGTGAGATCCAGAGGCAGGAAAGGTAAGGTTGTATTGCAGTCTCTCCCAGGTAGAGGGAAGTGCTGCCATAGCAGTGTTGACTGAGGAATGGGTTGGATGTTTTTGGTGACACAGAAAGGCTGCCAGAACGCCAGGGAGAGCATGGCGTGAGGAGCTCGGAGGTGCAGGCAAGGGAGGGGCATGTGCAGCCCCCGAAGCTCTGCAGGAGCGCTCCGTTTGCCTCTGTGCTGTGTGATGTGCAGCTCACAGAGAGTTCCAGAGCAAAGGGGCAACATGAGCTGATATGCTTCTTCAACGAGCACATTCCAGCTGTTGGATGACAGATGGATTGTGAAGGAAGTCTGGAAGCAGGAAGAGTGGTCAGGAAGCTGTTACCGCTGATCCTTGTTTGAACTTGGATGGCTGTGAAAACTGGGAAACACGAACAGATTTGGGTCGTGTTAGAGGCACTGGTGGTGACCTACTGCTGGGCTCCTGTCGGGGGTTGGGGAAGGGCGGAGTCAAGAAGGTATCTAAACTTTCAGCCTGAGAATTGGAAATGGAATCGCCCGTTTCCTGACCAAAGGGGAGCAGCCAGTTCCTGGAAAGAAGGATTCCAGGCGTGATTTCGCTTGTGTTGTTTGAGACGCTTGGTAGACATCCCTGTGGAGATGCCCATGGGCTGTGACACACATGCTTAGAGCCAGGAGAGGCTGCTAGGGCCAGAGACACGCGCTCTGCGGTCCCTTGTGTATAGACGGCCCCAGGGGTCGCGTGCGGCCCCTTCCACGGAGTAGAGGGGCCGCCCGAGCGTGGGCAGTGAAGCGCAGGAAGCGCTGGCGGGAAGGCACCATTATTGCGCTTTCTTTCTTCACAAGAGAGGCGGGAACCAGGACCACGTGGTGTTTAAGGAAAGAAGGCGGTTGCTTCTTGCTGATCGCTGTGAGAATTGGGTGATAACAGAAAGGGTGGTTTTGGTAACGCAGAAGATGGAGAAACTTGGAAGTGCGGAAGCCGGTCGTGAGCTTGACGTACCCTCAGTGGCGCGGCTGAGATGAGTGCGTCTCAGGGTGAGGCTGAGTGGAGGGTTGACCGCAGCAGGGTGGGTGTGGGGTGGTCCTCTCGGTCGTGGAGGAAAGTCACTTTACGATGAGAACGTGGTGTCAGACTGTAATCTTCCTGTTTGTTTTTTAATGGAGGGAAGTTGCGGTACAGCGTTGCCTGTCTCCGCTGCACATGAGGTAGATCACTGAGTGCGCGTGTGCCCCTCCCCGCCTCGCCGGCCCAGCCCCTCGGTCGGCGCAGAGCCCCGAGCCGAGCCTCCCGTGCTGTGCGGCTTCTTCCACTAGCTGCCTGTTTACGCGTGGTAGCTGTGCACGTCCACACTGCTTTCCCATTCGTCCCTCTCGCTCCTTCCCCCACTGTGTCTCTAAGTCCCTCCTTTATATAGTGATTAGAGAAGGAAAGCTCACAGGAAGTCTCTAAATCGCAGACAGCTGGAGAGGTGCGGCATTCGTCAGTTCGATGGAGTTGAGCAGAGACAAGGTGTGGGAGCAGGGGCGACAGAGGGAGTCTGCGTCAGGATGCCGTGCGCTGTCGGTGAGCAGGTGTGATCCTGGGGCTGACAGAGCACGCCACGCGGAAGGCGCTCGTGTGTGTGGTGCTCAACAGCCTGAGGGACACGAGGAGGTTTCTAGAAAATGTCTGTGTCGTGGGAATGGAGATAAGAGGCTTGTGCTCTGTTCAGGTGTTGCTGGCTTTTTCTATAGCACCTTTAAGTCCTTCTTCATGCTGAAGCCAGTCTTCATCTCCTTTTATTATTTTTCACATCTTTTAATTTTGAATCACTCTTTTTTATCCCCATCAAGACGTTTCACCTGGTTTCAGTCTCTTGGCATCAACCATATAACGTGTCTCTTACTTATATATATTCTGGTTTCTTTTACTTAATATAATGCTTGTAAGATCAAGCTGTTACAGTTATACAGTAGTTTGTTCACTTTCGTAGCTTCACACTGTTCTGTTACAGGTGAACTTCATGGCTTTTTATGTTCTCACCTGTTGATGGACATGTGGGTTCCGTCCCACGTGTGGCTGCTGGGTAGGGCACTGGCTACAGATGTTCTTGTCCCTGTTTCCGTGAGCCTCTGCACCTAATTCTGTTGGGCTCCTACCAGAGAGAGCACGTCCTGGTCATGAGCTGTGCCCACGTTCAGTTTCGATCATGTAGCCAAAGTCCGTGACAGCCCCTCTGGCCCGTGTCGCTCCCCGCCAGGCATGTTTTGAAATTTACATGCTTCAGGAAGGTTTCCATCTTCTGAAGGGCGATAACATCACTTTCCATCCTTCTGTTTCGGCACATAG
Seq C2 exon
ATTACAGCGTGTTTTCTCAGCAGCCGCAAGAGGAAGAGTTGGATTCAAAATCCTTCGACGAGATGGAACAGAGCTTGCTTATTCTCTCCGAAAGTAAGGCTGCTCTGGTGAGCGCCAAGGGCCTCTGGACGCAGCAGGTGTTTACCATCGCCAGGTTTCACTTCCTCAACTTGAGACGCGAAAGCAAGTCCCTGAGATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747:ENSBTAT00000003563:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(1.4=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development