DreINT0023722 @ danRer10
Intron Retention
Gene
ENSDARG00000074041 | abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
Coordinates
chr12:38663508-38665594:+
Coord C1 exon
chr12:38663508-38663627
Coord A exon
chr12:38663628-38665392
Coord C2 exon
chr12:38665393-38665594
Length
1765 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
GTGTGTTTCTTCACTGCCAGACT
3' ss Score
6.89
Exon sequences
Seq C1 exon
GGCTGTTTGCGGAGCTGGACTGTCGACCAGACCTGGGTATCATTAACTACGGTGTCTCCATGACAACATTAGAGGATGTATTCTTGCGTCTGGAGGCGGAAGCAGAGGTGGATCAGGCTG
Seq A exon
GTAAGATTGCCACCTGCCTAAGGCTACATGTACACTAGTGCAGTTTCATTTAAAACACACACACATTTTGCTAGATTTATGTGTGGGATCATTATTACTCTAGAGGTACAGTTTTTTATTTTTTTATCATTTTTTATTTATTTTTTTGTTTAAACTCTTGCCTTTTTATTAGATGGACCAAAACACAAACTTTTAATAGATATTTAATAGAAGCTGAGATAGCAGAAAGTTCTTTCTTTCTTTCTTTCTTTCTTACTCTTTCTCTTTCTTTTTTCTTACTCTTTCTTTCTTTCTTACTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTACTCTTTCTCTTTCTTTTTTCTTACTCTTTCTTTCTTTCTTACTCTTTCTTTCTTTCTTTCTTTCTTACTCTTTCTTTCTTACTCTTTCTTTCTTTCTTTCTTACTCTTTCTTACTCTTTCTTTCTTTCTTACTCTTTCTCTTTCTTTCTTTCTTACTCTTTCTTACTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTACTCTTTCTCTTTCTTTTTTCTTACTCTTTCTTTCTTTCTTACTTTTTCTTTCTTTCTTACTCTTTCTTTCTTACTCTTTCTTTCTTTCTTTCTTTCTTACTCTTTCTTACTCTTTCTTACTCTTTCTTTCTTTCTTACTCTTTCTTTCTTTCTTACTCTTTCTTTCTTTCTTACTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTACTCTTTCTTTCTTTCTTTCTTTCTTACTCTTTCTCTTTCTTCCTTTCCTACTCTTTCTCTTTCTTTCATTCTTTCTTACTCTTTCTTCCTTTCTTACTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTACTCTTTCTCTTTATTTCATTCTTTCTTACTCTTTCTCTTTCTTTCATTCTTTCTTTCTTGTTCTTTTTCTTGCTTTCTTTTTTTTCTTTCTTTCTGACATCGCAGTCGAACAAACGCATAAATATAGGTTTTCTGCTTAGTTTCAATGGTCAGTTATACAGTCTATAGCAGTTGCACCAACCAACCACACTGCTAAATAATGTTCTAAATGGATACTGAAACGCGAGTAAAGTGCAAAAACTTTTATCCATAAAGAAATTCATAATGTAACAAACGATTCCTTAATTATCATTAAAAACAATTGTATTGATCTGATTAAGCAATTATTTGTTTGCCTTTCATTTAATTTAATGTTTAAATGTCTATACAGTGTACAAATTAGACATGTTGTTCATAATAAATGTGATGCTTGATTTAATGAATTGAGGTTTTTATCTGAATAAATATTTATTTTATCTGAACAACACGTCAACTTTAATGTGACTAAACTGTTTAATTCTAGACGTATGTATAACAGATTAGTTAATTTATTTAATTGCTGTATATACAGTTTTGTACTAATGTAGTTACTTATAATTTGAATTGTAATTTGTTTTATTTAAAAAATACATAGGCAACTGTTTTGTACTGCTATTTCTATAGCTACTTTATCTTCCAAATTTTTTTCTGTCATGTTGTTTGCATGGAGATCTTTTCTGAAACTCAATAGATGCATTTAATTTTAAAACACCATGTTTACATGAAAGCACACTAATGTATAACCAAACTGGTTCATAGCATCTCTATGCCATAAATTTTAACCAGCCATGGTGATACTCAAGATATATAATGGCTCCTCTCTATCTGTGTGTGTTTCTTCACTGCCAG
Seq C2 exon
ACTACAGTGTCTTTAACCAGGAAAAAGTGGAAGAAGAGGGAGATGCGTCCTCTATGGATGACACAGACCAGAGGCTGCTGACGTTTTCAGACAGCAGACAGGACACAGTAACTGGTCATGCCCTCTGGAGGCAGCAGTTTAGCACAGTGGCCTGGCTGCACATGCTCAACCTCCAGAGAGAGAGAAAACCTATTATATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074041:ENSDART00000155563:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCTGGACTGTCGACC
R:
AGGTTTTCTCTCTCTCTGGAGGT
Band lengths:
302-2067
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]