BtaINT0011130 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61918102-61918360:+
Coord C1 exon
chr19:61918102-61918177
Coord A exon
chr19:61918178-61918265
Coord C2 exon
chr19:61918266-61918360
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
CCGTGTTTGTCGTCCCCCAGCTG
3' ss Score
8.53
Exon sequences
Seq C1 exon
AATAACAAATGCACTTGATCTAAAAGAACACCTGCAGAAAACAGTGAAGAAACTTCCTGCAGGAATCAGGCGCAAG
Seq A exon
GTGCGTTTGCAGACCGCGCGCATGCAGCCCCGCGCCCGGCACCGTGCCGGCGAGTGTCTTACAGCCCCCCGTGTTTGTCGTCCCCCAG
Seq C2 exon
CTGTGTTTCGCCCTGAGCATGCTGGGGAACCCCCCGGTCACGCTGCTGGATGAGCCGTCCACAGGCATGGATCCCAAAGCCAAGCAGCACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747:ENSBTAT00000003563:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.1=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(13.7=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATGCACTTGATCTAAAAGAACA
R:
CACATGTGCTGCTTGGCTTTG
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development