RnoINT0010301 @ rn6
Intron Retention
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98581548-98581833:-
Coord C1 exon
chr10:98581758-98581833
Coord A exon
chr10:98581643-98581757
Coord C2 exon
chr10:98581548-98581642
Length
115 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
TCCCTCTTTCTTCCTCCTAGCTG
3' ss Score
9.64
Exon sequences
Seq C1 exon
AATAACAAAAGCCCTTGATTTGAAAGAACATCTTCAGAAAACTGTAAAGAAACTCCCTGCAGGGATCAAGCGAAAG
Seq A exon
GTATTCTTCATCAGAGGACAGATACGTGTATTTCATTAGTTGAGGGTCCATTGCTCTCTGGGCAGACGTCCTCAGACTGAAGCCTTAGTCCAGCCTCCCTCTTTCTTCCTCCTAG
Seq C2 exon
CTGTGTTTTGCTCTCAGTATGCTGGGGAATCCTCAGGTGACACTGCTGGATGAGCCGTCTACAGGTATGGACCCCAGAGCCAAACAGCACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378:ENSRNOT00000005848:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.1=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(13.7=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACAAAAGCCCTTGATTTGAAAGA
R:
CACATGTGCTGTTTGGCTCTG
Band lengths:
170-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]