GgaINT0127862 @ galGal3
Intron Retention
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7970383-7970634:-
Coord C1 exon
chr18:7970559-7970634
Coord A exon
chr18:7970478-7970558
Coord C2 exon
chr18:7970383-7970477
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CTTCTTTTCCTCCCCCTCAGCTC
3' ss Score
9.92
Exon sequences
Seq C1 exon
CATCTCAAGTGCCCTGGATTTTAAAGACCACCTGCAGAAGACGACAAAGAAGTTGGGCGTGGGGCTGAAGCGCAAG
Seq A exon
GTATGGGAGAGCTCCCAGGGCTGCCACGGGGCTGCTGGCAGGGGGTGCTGTATCCTCACCCCTTCTTTTCCTCCCCCTCAG
Seq C2 exon
CTCTGCTTCGCCCTGAGCATGCTGGGCAGCCCCCGCGTCACGCTGCTGGATGAGCCCTCCACCGGCATGGACCCCAAGGCCAAGCAGCGCATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333:ENSGALT00000006907:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.1=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(13.7=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCAAGTGCCCTGGATTT
R:
ATGCGCTGCTTGGCCTTG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]