BtaINT0011132 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61919042-61919888:+
Coord C1 exon
chr19:61919042-61919161
Coord A exon
chr19:61919162-61919740
Coord C2 exon
chr19:61919741-61919888
Length
579 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TCTTTTAAAATTTACTACAGGTG
3' ss Score
8.24
Exon sequences
Seq C1 exon
GAGAGCGATTAGAACCGCATTCAAAAACAGGAAGCGGGCCGCTATTCTGACCACTCACTACATGGAGGAGGCGGAGGCCGTCTGCGACCGTGTGGCCATCATGGTGTCCGGGCGGCTGAG
Seq A exon
GTGGGCGTCGGCCAGTGGGAGGCGGGGTGTGGGCTGTGGCGGCGTCATTTCAGAGACGTCGCATGATCCGTATCAGTTTAAGTGTTGAGACATGCTTCCTTGTTTAATCAGCTTTCCATAGAATTTCTTGGAAATGTGTTACTTCTCCCAAATATTGGCCAGCTGTTCTGCCGGTGCAGACTCCCTGTTCTCTCTTACCTTTGCAACTTTTACATAAATTGGCCAAGGACTCCAGCATAAGAACTTTACTCATCTATTCTTTTCTCTATAATGAACTTTATTTTGGTTGCGCTGGATCTGTTGCTGTGAGCAGGCTTCCTCTAGTTGTGACGAGGAGGTACTCTCGACGGCGGGTGTGGGCTTCTCCCTGCGGTGGCTTCTCTGGTGGAGGCACACGGGCTGGCTGTGGCCACGGGCTTGGTTGGAACAAGACCAGGGACTGAGCTCATGTCCCCGGCGGTGACTGGCAGAAGAAGCACTGGGCCACCACGGAAGTCCTCAATTATCCTGAAGTGAGAAATTACCTTTGAAACTATCGGCTTCTTTCTTATCTATACGTTCTTTTAAAATTTACTACAG
Seq C2 exon
GTGTATTGGGACAGTCCAGCATCTGAAGAGTAAATATGGAAAAGGATACTTTTTGGAAATCAAATTAAAGGACTGGATAGAAGACCTGGAAGTAGACCGTCTTCAAAGAGAAGTTCAGTGTATTTTCCCAAACGCAAGCCGTCAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747:ENSBTAT00000003563:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGATTAGAACCGCATTCA
R:
ACGGCTTGCGTTTGGGAAAAT
Band lengths:
262-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development