DreINT0023741 @ danRer10
Intron Retention
Gene
ENSDARG00000074041 | abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
Coordinates
chr12:38676134-38676519:+
Coord C1 exon
chr12:38676134-38676253
Coord A exon
chr12:38676254-38676366
Coord C2 exon
chr12:38676367-38676519
Length
113 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TTTTGTTGCCCCCCCTGCAGGTG
3' ss Score
11.15
Exon sequences
Seq C1 exon
GAGAGCAATCCGTGCTGCTTTTAAGAACAAACAGCGAGGGGCACTGTTGACCACCCATTACATGGAAGAGGCAGAGGCTGTGTGTGACCGTGTGGCGATCATGGTATCTGGTCAGCTGAG
Seq A exon
GTAAACACTGACTACAACTAAAGATCTCAATTTTTAAAAAATGTTATGCAAATGAATTTGAAGCAAGTCCATAATTTGGAATAGAAAGCCCTTTTTTGTTGCCCCCCCTGCAG
Seq C2 exon
GTGTATTGGCTCAATCCAGCACCTGAAGGGGAAGTTTGGCCGAGGATACAGCCTAGAGATTAACCTCAGGGAGGAGCTCACAGGTCTCCAGCAGGTAGCGCTGTTGCACAAAGAGATACTGAAGATATTTCCCCATGCTGTTCGTCAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074041:ENSDART00000155563:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAACAAACAGCGAGGGGC
R:
CTGACGAACAGCATGGGGAAA
Band lengths:
247-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]