GgaINT0127864 @ galGal3
Intron Retention
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7969699-7970100:-
Coord C1 exon
chr18:7969981-7970100
Coord A exon
chr18:7969849-7969980
Coord C2 exon
chr18:7969699-7969848
Length
132 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TGCATCTCTGCAATTGGCAGGTG
3' ss Score
5.99
Exon sequences
Seq C1 exon
GAGGGCGATCCGAGCAGCCTTCAAAAACAAGGAGCGGGCGGCCATCCTGACCACACACTACATGGAGGAGGCGGACGCGGTGTGCGACCGCGTGGCCATCCTGGTGGCCGGGCAGCTCAG
Seq A exon
GTACTGCTCTCCAGGGTGGGCTGCTGGGGGCTGAAGGAGCCATCCCTTGGGAAATGCAGGCGGGCAGCTTTCAGCTCTGTTTCTCTTCCATCTGAATTTGAGTATGTCGTGATGCATCTCTGCAATTGGCAG
Seq C2 exon
GTGTATAGGCACCGTTCAACACCTGAAGAGTAAATTCGGCAGAGGGTACTTCTTGGAAATGAAATTGAAGGACACAGCAGATGTACAGCAGGTGGAGTACCTGCAGAGGCAGGTCCTGCACATCTTCCCAAACGCAAACCGTCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333:ENSGALT00000006907:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGCAGCCTTCAAAAACA
R:
ACGGTTTGCGTTTGGGAAGAT
Band lengths:
254-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]