Special

BtaINT0011139 @ bosTau6

Intron Retention

Gene
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62027821-62033093:+
Coord C1 exon
chr19:62027821-62027916
Coord A exon
chr19:62027917-62032888
Coord C2 exon
chr19:62032889-62033093
Length
4972 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CTCTCTCTTTTTTAATATAGGAA
3' ss Score
9.42
Exon sequences
Seq C1 exon
ATGCATATGAAACAGAAAAGTGTATACCAGCAAACTCAAGCACTTCTGTGCAAGAATCTACTGAAGAAATGGAGGATGAAAAGAGAGACCTTGCTG
Seq A exon
GTATGTTTGACCGTTTGATCCTTTTCACAGTTAGCAGTGTCCTTTTATTTCATTGCCTCATGGTTCTCTTGTATTTTAAGTAGCAGACTGCATTTATTTTGTTTTTTGAGGAGCTGTAAGGATGTATTTTATTGAATGAAAGATTCTTTCAATTCTCTAGTGCTTTACAATTGTCGAAAGGCTCACACACACACAGTCTCAAATAATCCTATTTGTTGTTGTTCAGTTGCTAAGTCGTGTCTGCCTCTGTGCGACCCCTGGACTGTAGCATGGCTTCCCTGTCCCTCACCACTTCCCGGAGTTTTCTCAGACTCTTGTCCGTCGAGTTGGTGACGCTGTCCAACCGTCTCATCCTCTGTCGCCCCTTCTCCTTTTGCCCTCGATCATTCCCAGCACCAGAGTCTTTTCCAACAAGTTGGCTCCTATAATAACCCTTTTTTTCTCTCACGCCATTATTGCCCCTACCCTTCCCCCTCCCGACTGGAAACCACCGCTTGTTCTCTCTATCTGTGAAAACCACATTTATTGACTTTGAATTTCTCTCCGGTTATTGGAATTGAGAGACTCACAGTAGTCTCTGAAAAACAACCCAGAACTGCAAAGACAAAGTTTTCCTCATATTTTTTTTAAAAAGGAAAGTAACTAAAATCTAATTATGTGGTAATTAGATTATAAGCAATTATTGAGCTTCCTAGGTAGCTCAGTAATAAAGAATCTGCCTGCCGATGCAGGAGACCTGGGTTTGATCCCTGGGTCGGGAAGATCCCCTGGAGAAGGAAGTGACAGCCCACTCCAGTATTCTTGCCTGGGAAATTCCATGGACAGAGGGGCCTGGTGGGCTACAGTCCATGAGGTCGCAAAGAGTCAGACACGACTGAGCGACTGAGCACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGCGAGGGATTGGAGGCAGGAGGAGAAGGAGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCAATGGACATGAGTTTGAGTGAACTGCGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCGATTCATGGGGTCGCAAAGAGTCAGACACGACTGACCGACTGAACTGAACTGAACTGATAGTATCCTGCATAAACCACTGAACTGTTGTTGCTCATTCTCTAAGTCTCATCTGACTCTTTTGTGATCTCATGGTCTGTGGCCCACCAGGCCCCTCTCTCCATGGGATTGTCCAGGCAAGAACACTGGAGTCGGTTGCCACTTCCTCCTCCAGAGGATCTTCCTGACCCAGAGATCAAACCCACATCTCCTGCATTGGCAGGCAGATGCTTCACCTCTGAGTCACCAGGGAAGTCCAAAATCAACTATACTCCAATTAAAAAAAAATTTAAAAAGAAAGAAAAGTAGGTGGAAAGTGAATTTGGCAAATCTGTACCAGGACCGGCTCATCTCCATCTCAGGCTGCTCTCCTTCCCCCGTTCTCCTTGTGCTCAGCCTCTTGTTGCTGCTGTGGATCCCCCCTCATTCATTCGCTCATTCATTCCCTCAGCCCACCCGCCCAGAGCGATGGCTCAGCCGGCTTCCACCGGCCACAGACGCACCAGCCTGCCTCTCCTCTCCTCTGGTCCCAGGTTCTTGTCTCTGATGGTCTAGGAGCTACCAGTGGAAGATGTTCCACTTTTAGCCCAAGCTTCCTTCAAATGAGAGAAGAGTAAGAGCTATAAGCTTTGAAATAAGGTCCCGGAGAGCGGGTTGTTCCAAATCATAAGTTAATCGATCAGCATGGCAAAAAATGGGACGTGATGGACTGTGTTCAATTTAAAAGTTAAGCTCTCAGACTGAATTGTAGGACCAGAAAACCAAGGGGGTGGAGATTCCTGCGTGTGTGTTTGGGGGCCAGTGGGAGTGAGTTTTGCTTTGAGGGGTATTTCTATGTATTTGTCTGTGTGTGTGTTAATAAAACGATAGTAGTCAAACTCAGTAATATCTGCATTTAAGGAGAATATTAGTATTTCTTTTTGGAACGCAGATGCACATGTATTTAGAATTAAGTTTTATCTGGATGTGTGTTATCTTGCTGCCTTAGAAGCTGACCTGTTGCCTGGTCCCTAAGACAGGCTTCCTGTGTCCATTACACCATAAAACCAACCACTCGGCCCCTGCCACCACCAGGTTCGGGACACCTGCTCTATCCAAGCCCATTTACTCGGCTTCTCTGAAGTATCCAGGATCCATCGGTATTCTCTTTTCCTTGTCACGGCTCAGAGATTATCTTTGCTTCTTTGCCAGTTTTCCTGAGGAAGGGGTCTAACTCTCCTGGTTCTGGGAGACTGGTCCCACTCCCATCCATAGCGTCCATGGTCCATGACGCAGCCTCCTTCCATCCTGGGAGCCGAGCATCCGGCCCCCTGGACTGCGGTCCCTCCCAGCTCTCCCCTGATGGGCACTGCGGCCGGCACCAGCCTGGTACTGCTGGGGACGCATCACCCGCCTGCTGGGCACCGATCAGGGCTCTTACCACCCTTCTCGATCTACTTTGGTCAATGAGAAGGGTCTTCAGTCCAATTGAGGGCATGCTGGCATGGTTTCCGGCAAGAGGTCACAAGCATCTTTCTCTATAATCTTCTTATACAACCCTTTCCAGAGGCATCTTCCTTCCACCTCTTCCCTCTTTCCAGTCACATGAGGGGCAGAAAGCCTTCTCAGCATCATTTATCCCTCAAATGCACCTCTCAATAACTGTGCAGCTCACAGACATAACACCAGCCCTTCGTCCCAAACCCAAGTGAATGGACTGGTATATTTTCAACTAGGTTCTGTGCTTAAACCATGAACAATAATTATCTTTTTTATTTAAGATTTTTTAAAAACTGATTTGTACTCTCAGTCTAGTTCAGTCGCTCAGTTGTGTCCGACTCTTTGCGACCCATGGACTGCAGCATGCCAGGCTTCCCCGTCCATCACAAAACTCACGGAGGTTTGTATTATATGCTGACTTCTAGACCATCTGGATGTAAAACTACGTGGACCCCTAACGTACCTCCTTCTCTGCTCAGTTGGACAGAGCACCTGGAGGGGCACGGCCTCCGCAGTGCACCCTGGCACAGATGGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCCTACCCTTCCCCCTCCCGACTGGAAACCACCGCTTGTTCTATCTGTGAAAACCACATTTATTGACTTTGAATTTCTCTCCGGTTATTGGAATTGAGAGACTCACAGTAGTCTCTGAAAAACAACCCAGAACTGCAAAGACAAAGTTTTCCTCATATTTTTTTTAAAAAGGAAAGTAACTAAAATCTAATTATGTGGTAATTAGATTATAAGCAATTATTGAGCTTCCTAGGTAGCTCAGTAATAAAGAATCTGCCTGCCGATGCAGGAGACCTGGGTTTGATCCCTGGGTCGGGAAGATCCCCTGGAGAAGGAAGTGACAGCCCACTCCAGTATTCTTGCCTGGGAAATTCCATGGACAGAGGGGCCTGGTGGGCTACAGTCCATGAGGTCGCAAAGAGTCAGACACGACTGAGCGACTGAGCACATAGCAACTATTAAAGCTTCCATCATGGGTAATAAATTTAGAGTCAAGAAATACTAACCACAGCACCTGCAAAAATAGAGGAATTTTAATTGGGGGCATTTATTTTCAAGGCCATAAATTTTCTACACAGAGATTATTTCCAAGAATTATGACCAAGTGACCCACTGATTGTCAGTGTGCATTAAAGCCCCGCATCTCAATAGCTCAACGCAGCAAAGGTTTGTTCGTCACTCTTTGCAGTCTAAGCAAGGTTGGCAGGGATAGGGACGCGGATTGGGCCGGCGGAGGGATCTTCTCCACACAGATACGCAGGGCGCCAGCCTCCTTCATCGAGCGACTCCGCCACTGATCGCGCGAGACTTTGGAGAGACCCTCGGGACGGGAAGGACTGAGACAGACAGAAGAAGGAAGCCTGCGCGGGGCTCCATTAACCAGGCCTGGGCCCACGTTCCAGTGCCTGCCAGAACTCAAGCGTTTGGTCCCACGGACTTTGCAGAGGCGGGGAAGGCCGTCTAGCATCGTGCCAAACAGGAGGAGAGGATGAATGCCGAAGAGCCACTAGACAGTCTCTACCACTCCGCCCCTTCTCATGGATACGGCGGGAGTGGTAATGGTTTAGTTGCTAAGTCAAGTCTGGCTCTTTGCGACCCCCACGGGACTGTAGCCCACCAGGCTCCTCTGTCCGTGCGGTTTCCCAGGCAAGAGTACTGGAGTGGGTTGCCGTTTGCTTCTCCAGGGGATCTTCCCAACCCAGGGATCAGACCCGTATCTCCTTGGCCTGGCAGGCTGATTCTTTACCGCTGAGCCACAGGGATGCCCCTGAATACGACAGCTGACAGACTGTTGCTCTTTGCCCTCCTGAACTCCTTCTGGGGGGCCCTGTGTCTTATAGACTCTGAGACCACCTGCCTGTGCATATAAGGACTGTAGGCCTGTTCGCCATCCTCGTGGGCTCTGGAATGGCTTCCGCAGTAGTTCATCATTTAACGCAGGAGTTCAGTTCCAGAGTTAGAGAACGACCTGTGGTCAGATGCTGTGGTGTAGATCTTTGGTTGCGTCCCGTTGCTCTGAAGAGTGACGGCAACGAGAAGCCAATTTGTCTTTAATTGTTCTGGTCTGTTGACTGAGCTCCTTAAGGGATTACAATCTAAATTTGTTCTCTCTCTTTTTTAATATAG
Seq C2 exon
GAATGGGGGTTCCCGATACTTTTAGCACTTTATATGTGCATATTTTCACGTTTAAATGAAAATGTCCGTTTTCCTGGAATGCCTCCCCAGAACCTGGGAAGGGTAGATAAATATAATAGGTCTTTTACGGATGTTGTGTACACACCAGTCTCCAACTTGACCCAGCAGATAATGAATAAGACGGCACTTGCTCCTGTTATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921:ENSBTAT00000009089:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion (1st CDS intron)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(17.4=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
ALTERNATIVE
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development