RnoINT0010313 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98542253-98544447:-
Coord C1 exon
chr10:98544349-98544447
Coord A exon
chr10:98542458-98544348
Coord C2 exon
chr10:98542253-98542457
Length
1891 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CTTAAAAACCTGTCTTGTAGGAG
3' ss Score
5.54
Exon sequences
Seq C1 exon
ATGGGGAGTATGAAGGAGTTGAGTGTGCGTCAGCAGACCCGAGTGCTTCTGCACAAGAATCTGCTCAAGAAATGGCGGATGAAGAGAGAGAGCCTATTG
Seq A exon
GTAAGTGCAGACATTCCGCCCTCCCCTCAGCCTTCTTTCCTTGCCTGAGTATTTCAAATATTACGGTTTAATCGGAAGACTATATTTATTACTTTTGAGGTGGGTACTTCCCAGCTATGTTTGTTCGATTGAAAAACTCATATGGTACGGTCTATGACCAGTGCCACAGAATCACGAAGACCGAGGGTATTACATTTTTCAAAAAGGGGGATTCAGTTGCATGGTAAAGTTGTAGCAAAGGTCAAATCATCCCGTATTCTACAGTGGGGACCAAGACATGATCCAAAGTCGGTGAGTATGAACTGAGAGAAATTCGATGTCATTGTTCTCTATTCAAAACTATTGGGTTTTTTTTTATGTGAAGGTTATTTCCAAGGATTACAAAAGAATGACTGTGTCGGTTTGTGCTAAGCAGATGCTTTGAGAAGTGGCGAATAGTACCAACCTCAGTGGCTTCACGTGGGACAGATGTTCTGTGTTTACTACTTTTAGTACAGTCAGTATAGAAGAGAAGCAAGCGAGTGGGTCTAGGACTGTTTCCACTCGCCTGGGTACCTAGTTTCTTCATCTAGGCGCTGCCACCGCCTCTGATCGTGGTAACCTCTGCTGAGCTCCTCATGAGACAAAGCAGAAGGCTGAGGCAGAGAGTGTAGTCAGTTAGGTCTACACAGCGGGCCTGGAGGTGGCGTGGACTACGTCTGCCTATTTTCCATAGAAAAGAACCCAGTCTTCAATTCCCACTTGTACCTAAGAGGATGCTCTAGTCAAAAACCTACAGGCTTCAATTCATTTACACTGTAAGAACTTAATGTGGTCACCTAAAAGAAATGAACGGACAGTGCCAGTATTTGGAAGTAAGTTCCAGAGATGAGGACGTAAGTGCTCTCTGTTCAGATAAAGTCGGGCATGAAGCTGAAACGTTTATTAATGCGAGACTTCAACAGTATCTTCTCTTTCTACATTGTTTTGCTATTGCTTCGTGGCTACTGTTTGTTTCCTATTTTGCCTGTATGTTTGTCAGACTACGGAGAGGTGTCCTTGGGCCTAGTGTTCTGGGATCATAGCAAGAAGGAAGAAATTATCATTGTTCATGATTCACTGGAGAGTGTCTCCTATGAAGTTTCTACTAATTTCCTTTAGTTTTTTCTTTCTTTCATTCATTCTTTTTTCTTTCTTTCTTTCTTTCTCCTTCCTTCCCCTCCTTTTTTCCTTCCTCCCTCCTTCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTTTGAGACAGGGTTTCACTGTATAACAGAGCCCTGGTTGTCCTGACTTCCAGACTGGCCTCAAACTCATAAGCGATTCATCTGACTGTGTCTCCCTACTGCTAGGATTAAAGGCATGGGACACTATGCCCCGCTTGCATTTTCTTTTGTTCTTAATAAAAAAAATATGACAACTACCAAGAAACATTGTGATTTGCCAGCATGAATTCCATGTGGAACATTTGTGCCTTATGTCTAGAATTGGCTTTCCAGTCGATCAAGATGTTCACACAATTAAGTGTTCCATTAAGTTTCCAGATGACTTCTGAAATCATTTGGTGACTTTCACGCACAACTTTAGATCAGAGAGTGACACGGGCGACTGCTACCTCAGAATGTGTCCTTCACAGAGTTTTCCCTGAAGAACGAAGGGCAATGAGAAACCAATTATATGGGAAAATTGAGTTTAGTGTTGACCGATTTGAAGAGAAATAAATCTAGGCTTATAATTTTCTCTCTTAAAAACCTGTCTTGTAG
Seq C2 exon
GAGTGGAGCATACCGGTTGTTATAGGACTGTATATGGGTCTGTTTTCCTATTTCAAAGAAAACAATCAGGTCCCGGAAGTCCCTCCTCAGGATCTTGGAAGCATAGATGAATTCAATGGCTCTTCTATAATGGTTGTATATACTCCAATCTCTAATGTAACCCAACAAATAATGAACAAAACCATAACTGCTCCAACTATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(1.0=12.1)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAGTATGAAGGAGTTGAGT
R:
TTTCATAGTTGGAGCAGTTATGGT
Band lengths:
302-2193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]