BtaINT0011145 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62061125-62062626:+
Coord C1 exon
chr19:62061125-62061215
Coord A exon
chr19:62061216-62062486
Coord C2 exon
chr19:62062487-62062626
Length
1271 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TCTTTCCTTTTACATATTAGTTT
3' ss Score
5.89
Exon sequences
Seq C1 exon
ATAGGAAAGTGATCCTGTCCAAAGGGAGGCTGAAGTGCGCGGGCTCGTCTGTCTTTTTGAAGCGAAGATGGGGTCTCGGCTATCACCTAAG
Seq A exon
GTAAAGGCACTGGGGGTGGCCTGGCTCTGTAGACGCATCTTCAGTGATGGGCTGTCTCCAAGGTAGGCTGCCCCGAGAGAGACTGGGATCTCACGCTTCAGCTCGCTCAGCTGGGTTGGTCTGGGTCTGCCGCGTGCTCCTCTGTATTCTTGTCGCCTGCATTTTCACCAGCGCTGAGGACGGGGCAGATTTCAAAGGGAGAAGCCCTAGAAGACTGATGACTGCCTCCCGGACCCCCTTCCAGGCTGAGACTGTGGGTGGTCTTACCTCCTGGACCCCCTTCCAGGCTGAGGCCGTGGGTGGCCTGACCTCGTGGACCCCTATCCAGGCCGAGGCCATATGTGATCTAACCTTCTGGACCCCCCTCCAGGCTGAGGCCATGGGTAGTCTGACTTCGTGGACCCCCGTCCAACTGAGGCCATGTGTGGTCTGACTTCCCAAACCCCTGTCCAGACTGAGGCCATGGGTGGTCTGACCTCATGGACCCCCATCCAGGCTGAGGCCGTGTGTGGTCTGACCTCATGGATCCCAGTCCAGTCTGAGGCTGTGAGTGGTCTGACCTCCTGAACCCCTGTCCAGACTGAGGCTGTGAGTGGTCTGACCTCCTGAACCCCTGTCTACACTGAGGCCATGGGTGGTCTAACCTCATGGACCCCGTCCAGGCTGAGGCCGTGGGTGGTCTGACAGGCCTCGACCTTTTCCTGCCCTGAATTTCCTCAGCTGACCCATGCAGTGCTCGGGTAGATGCCGTCCTTTCACAGGACACGAAGTCAAGTCCTTCTAGAAGCTACCGTCAACAGGGAGGAAATCTGGAGACAAAGACACACTCCAACCAGCAAGTGTGTCCAGGCCAAACCAATACTTTTTGGAAAAAACCTTGATGATGAAACAAAACATATGTGAAGGGCAGATTTCCCTATTAGACACTAGTTTTCTAACATCTGCACAGTCTGGTGTGGTAATTATTTTCCCTGAGAAATCTCCTGCCTAATGTTCCTGTCTGCCTGTGTTTCTCTCATACTTGATATATCATTTTAATCGCAGTATTTGCTTTTGTGTACTTTTGCTTTTGAGCTGATACGTCTCTGTATATATAGATCCCAAGATTTTCCAAACTGATGACATTGTTGTTACTGTTGTTATTTCCTCATTTGTTTGCTCCCTAAAGCCAAGTAAACTAATACACAAAGGCTAGAAATCCGACAAGAGCCCTGCTTTTGCGGCAGCGGTAGAGAAAACACAAATGAAGTGTCTTTCCTTTTACATATTAG
Seq C2 exon
TTTGTACAGAAATGAAACGTGTGATCCAGAAAAAATAACATCCCTCATTAATCACCACATCCCTGATGCTAAACTGAAAACGGAAAGCAAAGAAAAGCTTGTGTATACATTGCCTGCGGAAAGGACAAATAAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921:ENSBTAT00000009089:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCCTGTCCAAAGGGAGG
R:
TGGAAATTTATTTGTCCTTTCCGCA
Band lengths:
222-1493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development