RnoINT0010319 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98517622-98518831:-
Coord C1 exon
chr10:98518741-98518831
Coord A exon
chr10:98517762-98518740
Coord C2 exon
chr10:98517622-98517761
Length
979 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
ATTTTGTTTTGAAATCCTAGTTT
3' ss Score
3.42
Exon sequences
Seq C1 exon
ACAGGAAAGTGATCCTCTCCAACGGGGCTCTCAAGTGTACAGGGTCTTCCGTCTTCCTGAAGAGAAAGTGGGGTCTTGGATATCACTTAAG
Seq A exon
GTAAAGAAGTTTTGAGGAAAGGCTAAATAGATAAGTTTTTTAAAGGTCTGTTCTTTCTTTACTCCTATCTGCGTGTTGCTTATGGCGGTGCTTGAGGTCAGAGGAAGACATTGGGTCCCCTGGAGAGGAAGCCTTAGGCAGTTGCAAACCGCCAGACTTTGGTACTGGGAATGAAACGCTGGTCCTCTGGGAGAGTCTCAAATGCTGCTAAACAACGGAGACATCTTTCCAGCCCAATATGTATGCAAACCAGCGGTGAGCGTTCCTGAGAGCCAATAGCTCTCATGCCTCATCTCTGACAAAATGGAGGGAGAAGTGTTCAGTAAAACACTTTGTCTATTTTTCTGGCTTCTTGCAATCTGTGTCAATGTTAACTATACAATATTTCTTCATTGTAAACCAAAGCTCTGTGCTCACCACGGGGATACTTCATCAATTGCCCAGGTTGCCGCCTTTTGCAGCCTACGCTTCGACCTCTTCCTTCCCCGTCTTTCTCAGTGAATCCATAGAGTACTGTAGTATTTTCATTCTCTCTTTAGAATACAAGGCACTACTTCCAGAAAACCAGTGTTAGTAGGGACTGAATATGGTTCCAGAGAGTTGTGATGACTGTGTCTAAGAGGAGTGTAGGCTAGAAGGATTCTAAAAGGCAGAAATCCCCACCAAAAAGCAAACCAAAAATGTTTTGATGGTACACTAATTTCTCTGTTCACAGCCAGGTGCACTAATGACTTTCCCTTGGAAACCTCTTTTGTATGATGTCATCCCCCTGTCTGCTTATCTTTATAATATGCATATAACATTAACAGCAATGAGTATGTATTTGGAAGGCAGCTGTGTTCATCTCTGTACCACCAACGCCACTCTGTGTGTGTGCGTGTGTGTGTGCGCGCGCGCGCGTGTGTGTGTGTGCGTGTGTGTGTGTGGTGTAGCAGTTTGGAAATGTATTATTTGTCATGATTTTGTTTTGAAATCCTAG
Seq C2 exon
TTTGTTCATGAATGAAACGTGCGATTCAGAGCAGTTAACATCCTTCATCAATCACCACATCCCCGGTGCTAAACTAAAAGCAAAAACCAAAGAAAAGCTTGTGTACACTTTGCCACTGGAAAAGACAAGCAAGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGATCCTCTCCAACGGGG
R:
TGGGAACTTGCTTGTCTTTTCCA
Band lengths:
224-1203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]