BtaINT0011151 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62068389-62070173:+
Coord C1 exon
chr19:62068389-62068522
Coord A exon
chr19:62068523-62070035
Coord C2 exon
chr19:62070036-62070173
Length
1513 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TGTCTTTGTCTCCTGGGAAGGAC
3' ss Score
5.02
Exon sequences
Seq C1 exon
AATCAAACATTGAAGATTTTATACAGTCACTGAAGCATCAAAATATACTTTTGGAGGTGGATGACTTTGAAAACAGAAATGGCACCGAAGATCCCTCTTACAATGGGGCCATCATCGTTTCTGGGAAACGAAAG
Seq A exon
GTATGCTTGCCGCTTGCCTCTTGTGTTTGCTTTTATGAAAAAAAGCTAAAGTGCTACATTTTAGCTGATTTAAACACTGTGAAAAGTCAACCCAGCTAGTATACAGTGACAACGCAGAAACACGTGGGGTTATCATTGAGTAAACTGTGACATTTAAATAAGTTGTTGTAACACATTTTTATCTTAAATTTTGAATTAGAAGATTTTTTACATTTGAAGGTACCTAGATGTCATTGCATTATTCAGACTCAATAAAATATTAGACCTTCTGAGTACCAACCCCTATAATTTTGAATTTAAAAAATCCCATTTAATGATGAACTACCCAAGTGATATTTTTATATATTGAGAAAATACATTAAATACTATAATAATCACATGAAACCTCTGGGAGGAAAGTGCTCTCAGTTTATTATTTAATATTTTAATATGTTTCAATTTGGGTAACAGAGTGCAAGTAATAGAGACCCTCTCACAGGAATAAGACTATTGAAAATACATCCCAATCTTCAGTAAAACTCTGAGTTTACATCCCAGTGGAAAGCTGGGGCCGGATTCCATGAAGCTGGCTGTTTCTTTCTTGCTACAAGGGAAATAAAGCAAAAGTCATTGAAGATGAATCACTAGACCTCCCGACAGCAGGCACTTGGGAAAATGCGTAATCTCTGTGCCGACTCTCGGGAACTCCACTGCTTCTCAGCGGCTTTATTTGTTCCTGATCTCAGGTGTTTGCTGTGAACGATGGGTAACGTTGGACGATGCAGGAACACTTTTAGAATTCTGTGTGTCTCTGGCTGTGCTGGGCCTCCCCTGCTGTGCACAGGCTTTTCTCTGGGTGCAGCGAGTGGGGCTCCTCTCCAGACTCGGCTTCTCTTGCTGGGCCCACGGCTCTAGGCGCGTGAGCTCAGTAGCTGCGGTTCCCGGGCTCTGGAGCACAGGCGCTGTAGTTATGGGCTTAGTTGTTCCGTGGAATGTGGGATCTTCCCGGGCCAGAGATCGCACCTGTCTCCTGCATGGGCAGGCGGATTCTAAAGAATCCACTGAGCCACCAGAGAAGCCTGCGTGAGCATCTTTATAAACATGAAGAACATAAAGGTGGTCTCAGAGAGTGTGAAAACGCTTCATTGGCAGTGTAATCCCATGCTTACCTCCTACCCAGAAAATCAGGGTTCCTTTGCTTGCTGTCTGTAAGCTTAGTGTCCCCTTGTCGGGGCCACTGTTAAATCCTGGTCGATAAAACTTCCTCGTAAGCAAAATGAGAATGAATGATTTCAAATCAGTAATGCTGATAAAAATGCATATTGCCAGCTCTGCTATCTGCTCCACCAGAACCTAATGTACATGAACTCATTTAAGCCGTGTCCCAGCCCGTTCACTGCCCCCCCACAAAAGAGAAAGGTGACGCTCAGAAAGGCAGTTCACTCAGGCGGTCACACCAGCAGATGCGCCGCCAAGCTCTCTCCTCTTCAGCGACGTAGAGTCGTCACGTTGTCTGTCTTTGTCTCCTGGGAAG
Seq C2 exon
GACTATGGCTTCTCAGTCGTGTGCAACACCAAGCAGCTGCACTGCTTCCCTGTCCTCATGAGCGTCGTCAGCAACGTGCTGCTTCGGATGTTTAATCAAACACAGCGCATTCGGACCGAGAGAAGCTCATACCCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921:ENSBTAT00000009089:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.2=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATTTTATACAGTCACTGAAGC
R:
CAAAGGGTATGAGCTTCTCTCGG
Band lengths:
262-1775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development