RnoINT0010325 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98509069-98510604:-
Coord C1 exon
chr10:98510471-98510604
Coord A exon
chr10:98509207-98510470
Coord C2 exon
chr10:98509069-98509206
Length
1264 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TTTTCTTGTTGTTTTTTAAGGAC
3' ss Score
10.03
Exon sequences
Seq C1 exon
AGTCAAATATTGAAGATTTCGTGCAGTCGCTGAAGCATCAAAACATAGTTTTGGAAGTAGATGACTTTGAGAACAGAAACGCCACTGAGAGCCTTTCCTACAACGGAGCCATTATAGTTTCCGGAAGACAAAAG
Seq A exon
GTATGCTTTTCCTCTTGGATTCTGCCTTGGTGACTGCACCTACTCAAACCCAGCATCAAAGGCCTACGCTGTAACCCTGTAACCGTTTTAAAAAGCACAGGAAGCTAATATATGCTAACTCAACTTAGCAAAGCATGTGAGTCCGCATTGAATAAACATTTCGGTGGAACATTTTTCACCTTTGTTTCAAATTAAGTAGTCTCGCATCGAAAGGGAACGGATGACTTGCTTTGGTAAATTACTTACGAAATCAATCATCATTAATGAATGCAATCATGAATTTAACTACCCTTCTTTAAGTCAAGTGAGTGGTGATGTTTTATATATTGAGAAAGTACATTAAATACCGTCAGATCCACATGAAATCTAAAATAGGAAATGACTCCCCGTGCATTTCAAGTTCAGTGTAAGCCTTCGGGGGACTTATTAAGGGGCACACGTGTTGCAAATTCATCCTAATGGATGCCTGAGTCTTATTTGTGTTTCAATAAAGGTAAGAGAAGAGACAAAATTAATCAAAAGCATGTCTTTCTTTCCTGCTACGAGTAAAACAAAACACTAGAAGCCTTAAAAATTTGCCCCTTTTAACACATTGTAAACATTTAAACATATTTAAAAATATATAATATTTAATATGTTGTAAAGTGAGTCATCATTTTGATGTCAGCTTTGGGAAACTCCTTGTTTGACAGCTGCTTGGTGTGTCTTGTATATCCACTACACACACCATGGATAGTATTCCTGTAACAGACAATACTGAATTTCTGTGATGCGTGTTTTCATAGACATTAAGTATTAATGTTATCTTCAAAATCATAAAGGTTCTATGGCAATGTAACCATGAAAATCTCCTGTATTCCATGTTCACTCCCTATGTGCATGCTCACCATTGACAACAGTTATGGGGGGCCTTTAAACTCTACAAACTGAAGTTTCCTCCTTCTCAAAATAGGGACGAAGTGATACCAAAATTGATTGCACTAGTAAAATGTAGAATCAAGTAGGTTTGTCTCTGTCCTGTTCACTGTCTAAGGACCTCAAACCCTGTATGAGTTCATTTAGACTCCTCGTTCATAGATGAGAAAAAGAGGCTCAGAAAAGCTAGTTAAATTGAACATCGATACACAGCTAGAATTTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTGTGTGCAGGCGCATGCAGTTCCTTTACTTTTTCAAAGACTTTAATCTTACTTTTCTTGTTGTTTTTTAAG
Seq C2 exon
GACTACAGATTTTCAGCTGTGTGTAACACCAAGAGGCTACACTGCTTTCCCATATTGATGAATGTTATCAGCAATGGAATCCTTCGCATGCTCAATCATACACAGCACATCAGGCTTGAGGAAGATGTACTCTCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.2=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAAATATTGAAGATTTCGTGCA
R:
ATGAGAGTACATCTTCCTCAAGCC
Band lengths:
270-1534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]