BtaINT0011163 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62086974-62088017:+
Coord C1 exon
chr19:62086974-62087152
Coord A exon
chr19:62087153-62087941
Coord C2 exon
chr19:62087942-62088017
Length
789 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATG
5' ss Score
6.53
3' ss Seq
CTGGCCCTGTTTCCCACCAGGCT
3' ss Score
9.8
Exon sequences
Seq C1 exon
GTGGAGCTGACGGGGTACGGTTCGGATCCGGATCAGCAGGGGGACATCAGCATCCGGTTCCTGGGCTACTGTCCCCAGGAGAACGTGCTGTGGCCCAGCCTGACCACGCGCGAGCATCTGGAGGTGTTTGCTGCCGTGAAAGGGCTGCGGCGAGCGGACGCCCACATGGCCATCTCACG
Seq A exon
GTAATGTGCGCCCATGAGGCTCCTCTGTGCTGTCGCTGACAAGGAGTGGGGAGTAGGGGGACATCTCCATCTTCCGGGAGCAGCAGGGGTTGAGTGGGGATGGGGGCCAGGGGCCAAACCCTGCACCCCCGGCCGGGGGACCTTTAAAAGTTAACAGCGTAGAATAGCTGTCAGCGTCCAGTGATACAGAGGGCACCACTTACACGTAATCTAAACTGGGGCACAGACGAACTTACCGAAGAAACAGGAGCAGATGCACAGGACAGACGTGTGTTTCCCCGGGAGCCCGAGATGGGGAGGGATGGCGAGAGAGTCTGGGCTTGGCGGTGCAAGCTCTCACACATAGAATGATGAGTAGCAGAGTCCTACTGTGCAGCACGGGGAACTCTGTTCAGTATCCTGGCTTAGACCAGAGGGAAAAGAACGGGAAAAGGAATGTGACAGGCATAGCTGATTCACTTCGCTGTACGGCAGAAATTAATGCAACATTGTAAACCAGCTACACTTCAACAGAATAAATTGAAAAAATGTTAAGTGAATGAATAATCGTCTATTTCATGAGAATTCAGGTTAGTTTTACAATTTTTTATGAGATGTAAATCTTTCATGTTCAGAGTAGATTTTTAATTTTTTTTTTAATTGGGGGAGAATTGCTCTGCAGCGTTGCGTCGACGGTCAGTTCTGAGAGTGATGGTCCGAGGAGGACCCCAGGGCCGTCACCCCTGCGTCTGGTCGTCCTTCTCCCCACGTCCTCTCCTGATCTCGCCGTCTGGCCCTGTTTCCCACCAG
Seq C2 exon
GCTGGTGGACGCCTTCAGGCTGCACGAACAGCTGGACGTTCCCGTGCAGAAGTTATCGGGAGGGGCCGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921:ENSBTAT00000009089:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(40.1=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCTGACGGGGTAC
R:
CTTTCTGGCGGCCCCTCC
Band lengths:
255-1044
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development