RnoINT0010337 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98484556-98485313:-
Coord C1 exon
chr10:98485132-98485313
Coord A exon
chr10:98484632-98485131
Coord C2 exon
chr10:98484556-98484631
Length
500 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
CCCATCTTATTTTCTCTCAGATT
3' ss Score
10.06
Exon sequences
Seq C1 exon
GTGGAACTGAAAGAGTTAAGCTCAGCTGTGGCTCACCAGGGCGAGGGCCATGGTGCAGCCAAGCTCGGATACTGCCCTCAGGAGAACGTACTGTGGCCCATCCTGACCGTGAAGGAACACCTGGAGGTGTACGCCGCTGTGAAGGGGCTGAGGAAGAAGGATGCTGTCATTGCCATTTCAAG
Seq A exon
GTACCGCAGAGGGTCCTGGAATCCCCTTTCCTCAAGAGGTGGGAGGCGCTACTCACAATGGAAGCACTACTACTGAGAAACAGGAGCACAAAGACATTTCTGCCTTTTCAGAGCATTGGTGGTAGAACAGAAACGAGAGACCACACCAACTCCCTACATGCCTGAGCTCAGGGGCTAAAAATATCATTGTCTTCAATAGTTGACAAAGGAGAAGTAAGTCTGTGCTGGTGACTGTCTTCAGGATTCTAATAATAAAGAGAAGGGAATGGAATAACCATCCATTTGGTTTCCCATTTTTAAAATTAAATTACTTAACAATATAAAAATTAGATTATTTAAAAAGTAATCTCATGAGGCAAAAAAAGGAAATAACCTTTCATGATTTCAGTTTTGAGAACAGTACCGCCTTCCTCCCCTGCAATGGTTTTATAATTGTGCGTGATTTCATTTTCCGAGAAAGTTCTCTCTTGGTGTGATATTCCCATCTTATTTTCTCTCAG
Seq C2 exon
ATTAGTGAATGCTTTCAAACTACACGACCAGCTGAATGTCCAAGCGCGGAACCTAGTTGTGGGGTTGACTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(40.5=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACTGAAAGAGTTAAGCTCAGC
R:
TCTAGTCAACCCCACAACTAGGT
Band lengths:
254-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]