GgaINT0129162 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7921946-7922934:-
Coord C1 exon
chr18:7922756-7922934
Coord A exon
chr18:7922022-7922755
Coord C2 exon
chr18:7921946-7922021
Length
734 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTTTTTTCCCTTTCTCACAGAAT
3' ss Score
11.31
Exon sequences
Seq C1 exon
GTGCTGCTGAGGAGCCGAGATGCCAAGCCGGGCTGGCCACAGGACCATGTGCTTGCCTACCTGGGGCACTGCCCACAGGAGGACCCACTCTGGCCAGACCTCACTGTGTATGAGCACCTGAAGGTCTACGCTGCTGTAAAGGGCGTGTGCAAGGAAGACATGGCCACTGTCATCAACAG
Seq A exon
GTATGGGATGAGGGTGGTCCCAGGGTAAGTCAAGGGTTTATTTCACATCATAGGGTGCAGCGAGGAGATCTGAAAGTCAGAACCCTCTATGAGCAAGAAGATGCCTTGGAATGAAGCCAGGAAGTGAATCTGTAAAAGTGATTTTGTACTAAATGCAGTGATAGAGAGAGTAGGCTAAGGAAAGCTCCAGTTTGCCTAAGTGCATTTGATGGGGATGGATTTACCATTAACATCCCTTAAAGTACATTACCCATAGGAAGCATTTCTAAAGTCTCTGATATTATTGTTTGGCATTACAAGGAGGATGCTTACATAGTGCCTGCTCAGCAGGCACAGGAGGTGGAGTGGATCTATAATGCCGTTGACACAAATGACAGTTTTTAGGATAGAGTTTGTGGTCTGTTCAGTACGCTTAAGTTCCAGTGGTGATGCGTTGGCATGGGCTGCCCAGGGAGGAGGGGGGGATCACCATTCCTGAAGGTGTTCAGAACCAAGGAAATGTGGTACAGTGGGCATAGCAGGGTGGGTTGGGGTTGGATTTGGGGATCTTAGAGGTCTTTTCCAGTCTGAATGACTCTATAAGCATCCACTCATGTTTTTATAACACAATTTACTGAAATCAAGCAGGAGCCAAAAGTCAGAGATAAGAAAGTCCCTTTTTGTTATTGTTTTGGGAACTTCTGGTTAGGGTACCCAGCTAGGAATAACAGCTTCCTTTTTTCCCTTTCTCACAG
Seq C2 exon
AATAGTGAATGCTCTGCAGCTTCAAGACTATTTAAAAAAGCCAACCAGAAAGCTTCCTGCTGGGATAACCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(40.1=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGCTGAGGAGCCGA
R:
CAGGAAGCTTTCTGGTTGGCT
Band lengths:
238-972
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]