RnoINT0010422 @ rn6
Intron Retention
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98244086-98244790:-
Coord C1 exon
chr10:98244630-98244790
Coord A exon
chr10:98244162-98244629
Coord C2 exon
chr10:98244086-98244161
Length
468 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
GTTCCGCTGTCTCTCTTCAGGTT
3' ss Score
12.45
Exon sequences
Seq C1 exon
GTGCTACTGAAAGGGAGCAGAGAAGGGGACGCCCTGGGGTTCCTGGGGTACTGTCCTCAAGAGAACGCTCTGTGGCCCAACCTCACTGTGAAGGAGCACCTGGAGGTATTTGCTACAGTGTTGGGCCTGAGCAAAAGTCACGCTGCAGTCACCATTACAAG
Seq A exon
GTACACGGGTGGGGGTGCACCTAGAATAGGAGGAGGTCAGGGAGAAAGTGAGGTGACAACATTCAAAGAAAACTCGGGGCGGAAAGCTCAAGAGGCTGGGTAGGTTTACAATTAGCAATTAGTTTCCTGTTTAGGGGGTGTTAAATTTTTTTTTCTGTCATTAAACATGGAAAAGGGGGAATATATTGGTAAAATTTATTGAAAATACTAAAATTAAATGTATCGATCATAGATTAACTATTTGAATTCTGTGACATAACATGATACTGTTTGAGGAAGGCTCATGTCAGCCAACAATATCATGTTTTCCCCCACTAACACACACACACACACACACACACGCTCCAGAATTCGACCTATGGGTCCCACTCCTCCATCTTGGCCAGGCTCACTGCCCTTCCCTCCCTTTATCTCTCTTCACCGTGGAGTGGCTGGAGTGAACGGTTATGTTCCGCTGTCTCTCTTCAG
Seq C2 exon
GTTGGCAGATGCGCTCCAGCTGCAGGACCAGCTGAAGTCTCCGGTGAAGACACTGTCAGAGGGAGTGAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040:ENSRNOT00000005489:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(37.6=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(17.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACTGAAAGGGAGCAGAGA
R:
TCTTCACTCCCTCTGACAGTGT
Band lengths:
231-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]