GgaINT0129162 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8187252-8188240:-
Coord C1 exon
chr18:8188062-8188240
Coord A exon
chr18:8187328-8188061
Coord C2 exon
chr18:8187252-8187327
Length
734 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTTTTTTCCCTTTCTCACAGAAT
3' ss Score
11.31
Exon sequences
Seq C1 exon
GTGCTGCTGAGGAGCCGAGATGCCAAGCCGGGCTGGCCACAGGACCATGTGCTTGCCTACCTGGGGCACTGCCCACAGGAGGACCCACTCTGGCCAGACCTCACTGTGTATGAGCACCTGAAGGTCTACGCTGCTGTAAAGGGCGTGTGCAAGGAAGACATGGCCACTGTCATCAACAG
Seq A exon
GTATGGGATGAGGGTGGTCCCAGGGTAAGTCAAGGGTTTATTTCACATCATAGGGTGCAGCGAGGAGATCTGAAAGTCAGAACCCTCTATGAGCAAGAAGATGCCTTGGAATGAAGCCAGGAAGTGAATCTGTAAAAGTGATTTTGTACTAAATGCAGTGATAGAGAGAGTAGGCTAAGGAAAGCTCCAGTTTGCCTAAGTGCATTTGATGGGGATGGATTTACCATTAACATCCCTTAAAGTACATTACCCATAGGAAGCATTTCTAAAGTCTCTGATATTATTGTTTGGCATTACAAGGAGGATGCTTACATAGTGCCTGCTCAGCAGGCACAGGAGGTGGAGTGGATCTATAATGCCGTTGACACAAATGACAGTTTTTAGGATAGAGTTTGTGGTCTGTTCAGTACGCTTAAGTTCCAGTGGTGATGCGTTGGCATGGGCTGCCCAGGGAGGAGGGGGGGATCACCATTCCTGAAGGTGTTCAGAACCGTGGAAATGTGGTACAGTGGGCATAGCAGGGTGGGTTGGGGTTGGATTTGGGGATCTTAGAGGTCTTTTCCAGTCTGAATGACTCTATAAGCATCCACTCATGTTTTTATAACACAATTTACTGAAATCAAGCAGGAGCCAAAAGTCAGAGATAAGAAAGTCCCTTTTTGTTATTGTTTTGGGAACTTCTGGTTAGGGTACCCAGCTAGGAATAACAGCTTCCTTTTTTCCCTTTCTCACAG
Seq C2 exon
AATAGTGAATGCTCTGCAGCTTCAAGACTATTTAAAAAAGCCAACCAGAAAGCTTCCTGCTGGGATAACCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(40.1=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGCTGAGGAGCCGA
R:
CAGGAAGCTTTCTGGTTGGCT
Band lengths:
238-972
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]