BtaINT0011177 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45168609-45169289:+
Coord C1 exon
chr7:45168609-45168826
Coord A exon
chr7:45168827-45169112
Coord C2 exon
chr7:45169113-45169289
Length
286 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TACTCCCATACTTCTTTCAGGTT
3' ss Score
8.39
Exon sequences
Seq C1 exon
TGCGTGACTCTGGACAAGCTGGAGGCCGCCCCTTCAGAGGCCGCCCTGGTGGAGCGGGCCCTGAAGCTGCTCTCCGAGCACCGTTTCTGGGCCGGCATCGTCTTCTTGGGGCCCGAGGACTCCCCGGACCCCGCGCAGTCCCCAGGCCCTGGCCACGTGCGCATCAAGATCCGCATGGATATCGATGATGTCGAAAGAACCAATAAGATCAAGGACAG
Seq A exon
GTGGGGGGCCTTGTGGGTCGGAACCAGAGGGGGAGTGCTAGGGAGCATCTCACCTATCAGAGATCTTGGTAGGTGGGGCCCAAGTCCTTAGACCAATAGGAACCCACGATGGGCGGGGTTTATGGTGTGATGGGCACAGCCAAGGGCTTGGTGGGTGGGGTCAATGCCTTGGCTTCTGGGATAAGATTAAAGCACTTGGCAGGTGGGTCTAGGTAGTTTGTACACAGGTGAGGGCGGAGCTAAAGTTGTGATGGGCAGGTCCCAGCTACTCCCATACTTCTTTCAG
Seq C2 exon
GTTTTGGGACCCCGGTCCGGCCGCTGACCCCCTGACGGACCTGCGCTACGTGTGGGGTGGCTTCGTGTACCTGCAGGACCTGCTGGAGCGCGCAGCCGTGCGCGTGCTCACAGGCACCACCCCCCATGCCGGCCTCTACCTCCAGCAGATGCCCTACCCCTGCTATGTGGACGATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(4.1=15.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCTGGACAAGCTGGAGG
R:
AGGTCCTGCAGGTACACGAAG
Band lengths:
295-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]