GgaINT1005136 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2831960-2832600:-
Coord C1 exon
chr28:2832227-2832600
Coord A exon
chr28:2832137-2832226
Coord C2 exon
chr28:2831960-2832136
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
AGCATGCTGCTCTACCCCAGGTT
3' ss Score
5.68
Exon sequences
Seq C1 exon
GAGCTGCTGCTGGCCCCAGGCACGGCCCTGCTCCTGGATGGGCTCCTCAATGGCACCTCCCAGTCGGTGTTGGCACAGTTGCTGGCCGGGCCAGCGGGGCTCAGCTGGCAGCAGGCACTGGATGAAGCAGAGCGGGCGCTGGGTGCGCTGTCACAGCTCCTGGGGTGCGTCCGCCTGGACAAGATCGAGGCGGTGGGCAGCGAGGAGCAGTTGGTGGCCCGAGCCATGGAGCTGCTGGAGGAGCGGCAGTTCTGGGCTGCTGTGGTCTTCCAGCCCCCCCTGAACACCACGGCCACGGCGCTGCCCCCCCACGTGCGCTACAAGATCCGCATGGACATCGACGACGTCACGAGGACCGACAAGATCAAGGACAG
Seq A exon
GTTGGGGGACGCAGCCCCTCCGAGCATCCCAAGCCTGGCATGGGGTGTTGTGTGTCCCCCCCCTTCCCCCAGCATGCTGCTCTACCCCAG
Seq C2 exon
GTTTTGGGACCCAGGCCCTGAAGCTGACCCATTCAACGACCTGCACTACGTGTGGGGTGGCTTTGTCTACGTGCAGGACCTGGTGGAACAGGCGGTGGTGCGGGTGCAGACGGGGACCGCCCCACGGGTGGGGGTCTATCTGCAGCAGATGCCGTACCCCTGCTATGTGGATGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(12.1=48.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGAGGACCGACAAGATCA
R:
TCTGCTGCAGATAGACCCCC
Band lengths:
177-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]